Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5581g00001 ATGGGCCTCTCAAGTCTGCCAGCTCCATCTGAAGGGGTACTGTGTGTGCTTCTGGTTAACACTGCATTTTCTATATCCTTAGTTAAAGGCATTGTTAGAACAATCCTTCACATTGTTGGTATCAGTCTTTCATCATCTCCCACCACACCATCATCATCAGAATCATCCCCTTCTCAAGACCTGCCTGAGTCTCTCCAGTTTGACCTCTGTTCGCCGGAGAATTACATCGAAGAGTTCAGAAGCCGGACACCGACAATCCGGTTTGACAGTTTGTGTGGTTGCAAACATCCTGAAGAACATGACTGCTCTGTATGTCTGAGTCAATTTGAACCAGAATCTGAAGTAAATCGCTTGTCCTGTGGTCATCTCTTCCACAAGGATTGCTTGGAGAAGTGGTTGGGCTACTGGAACATTACATGCCCACTTTGCAGGACTCCATTGTTGCCTGAAGAAGAGGTTTCTTCTTGCTTTTGGTAA 477 0.4549 MGLSSLPAPSEGVLCVLLVNTAFSISLVKGIVRTILHIVGISLSSSPTTPSSSESSPSQDLPESLQFDLCSPENYIEEFRSRTPTIRFDSLCGCKHPEEHDCSVCLSQFEPESEVNRLSCGHLFHKDCLEKWLGYWNITCPLCRTPLLPEEEVSSCFW 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5581g00001 158 SMART ring_2 102 143 IPR001841 -
Pral5581g00001 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 152 IPR013083 -
Pral5581g00001 158 PANTHER - 1 156 IPR044249 -
Pral5581g00001 158 SUPERFAMILY RING/U-box 92 149 - -
Pral5581g00001 158 MobiDBLite consensus disorder prediction 44 63 - -
Pral5581g00001 158 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Pral5581g00001 158 Pfam Ring finger domain 101 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5581g00001 Pral-Chr5581 8487 10213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5581g00001 1 158 C3H Transcription Factor Family AT2G04240 62.963 1.82e-62 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5581g00001 K16285 - pop:7456018 233.032