Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5576g00003 ATGAAGCAATTTAGGCCATTGGATGCATCAAAACCAATTAATTGCGATGCAATTAATGCATTCTCATCCTCTCCTATTAAGGAAGATGGACTTGAAACGCTGAAGCTGGCTCTTACCCTCAATATTTCTGTTACTGTTTCTGCCATGGATCTTCACACGAATCTCAGAGATAGCTCTTACACCTTATCACAGCCAATGCATCTTCAAGAAACTTACTTGAGGCCTAATATGACGAAATTAGATGAATCTCCTTTTGGGGTTCCTAATTCATCACAGGGTTTCTTGCAAGATTTTAATTACCACGTTGATCATCAGCACCATCATCATAATCAGTTTCACCTTAATGAGTCTTCTTCATCCAACCCAGCTTTTGGAGGGATCCATACTTTGAGTTTTGATTCTTTTGATAACTTTGATGTTTATGAGTGCAAGCCTATTGTTGAGATCAATAATAATGGGCATGCTCAGGTTTTGGATGATTTCCAATATGGAGCTAATTGTAGCTTGAACGTCCCTCAGAGAAATGAAGCCAACATGAACCAAACCTATGTGCCTTTCAATAATTCCCAGGAAATCATAAGGCCTGTGAATTTTGTTGTGCCAGATGAACTCTCATGCATATCCCCTTCGGTGAATTATTACAGAAAAGTTGGCTTCAATAAGAAAAGTAATAGGGTATCATCATCTCTAAGAAGGACTAGTCACAGACTTCGCAAGAAATCCAACGCTGTAAAGGGCCAATGGACCATAGAAGAAGATAGGTTGCTGATTCAATTGGTGGAACAATATGGAGTGAGAAAGTGGTCTCATATTGCTCAGATGTTGCCAGGAAGAATAGGCAAACAGTGCAGAGAGAGATGGCATAATCATCTAAGACCTGACATAAAGAAGGAGACATGGACAGAAGAAGAAGACAAGATACTGATAGAAGCTCATGGAGAGATAGGAAACAAATGGGCAGAGATAGCCAAGAGATTGCCTGGAAGAACAGAAAACTCCATAAAGAACCATTGGAATGCGACAAAGAGAAGGCAATACTCCAAGAGAAAATGTCGCTCAAAGCACCCAAGACCCTCTCTTCTACAAGAATATATCAAAAGCTTGAACTTAGACCAAAACCCACCATTAGACTATCGCAAAAGATCATCGTCATCATTTTTATCCGCTGCTGCTAATACTAACACTGCCACAATCATAAACCAATCTGAAGCATCTCAGTCTCAGTTAATAATACGTGCTTCCCATGAGGATCCAATATTGGTGCCGAATAATTATGGGTTTAAGGAGGCCCAAGAGTTTTGCTTTGACCAGAGCTTGCTTCGAGAAGGAGGTGATGGTGAAGAAGATGATGATTTGGGTGATGACAAGTTTGAAGAAAAAATGGCAGAAATGGTAGAGTTTGAAGAGAAGAAGGAGCTGGATTTGGTGGAGATGATGTCTCAGGTCAATCAAGCTATTATTGATATGTAA 1470 0.3993 MKQFRPLDASKPINCDAINAFSSSPIKEDGLETLKLALTLNISVTVSAMDLHTNLRDSSYTLSQPMHLQETYLRPNMTKLDESPFGVPNSSQGFLQDFNYHVDHQHHHHNQFHLNESSSSNPAFGGIHTLSFDSFDNFDVYECKPIVEINNNGHAQVLDDFQYGANCSLNVPQRNEANMNQTYVPFNNSQEIIRPVNFVVPDELSCISPSVNYYRKVGFNKKSNRVSSSLRRTSHRLRKKSNAVKGQWTIEEDRLLIQLVEQYGVRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKETWTEEEDKILIEAHGEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKHPRPSLLQEYIKSLNLDQNPPLDYRKRSSSSFLSAAANTNTATIINQSEASQSQLIIRASHEDPILVPNNYGFKEAQEFCFDQSLLREGGDGEEDDDLGDDKFEEKMAEMVEFEEKKELDLVEMMSQVNQAIIDM 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5576g00003 489 Gene3D - 298 363 - -
Pral5576g00003 489 FunFam Transcription factor MYB119 298 362 - -
Pral5576g00003 489 CDD SANT 299 342 IPR001005 -
Pral5576g00003 489 FunFam Transcriptional activator Myb isoform A 244 297 - -
Pral5576g00003 489 Pfam Myb-like DNA-binding domain 297 339 IPR001005 -
Pral5576g00003 489 Pfam Myb-like DNA-binding domain 245 291 IPR001005 -
Pral5576g00003 489 PANTHER MYB PROTEIN-RELATED 221 386 - -
Pral5576g00003 489 SMART sant 244 293 IPR001005 -
Pral5576g00003 489 SMART sant 296 344 IPR001005 -
Pral5576g00003 489 CDD SANT 248 291 IPR001005 -
Pral5576g00003 489 SUPERFAMILY Homeodomain-like 243 338 IPR009057 -
Pral5576g00003 489 Gene3D - 244 296 - -
Pral5576g00003 489 ProSiteProfiles Myb-like domain profile. 240 291 IPR001005 -
Pral5576g00003 489 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 240 295 IPR017930 -
Pral5576g00003 489 ProSiteProfiles Myb-like domain profile. 292 342 IPR001005 -
Pral5576g00003 489 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 296 346 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5576g00003 Pral-Chr5576 13240 15188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5576g00003 139 370 MYB Transcription Factor Family AT4G18770 60.241 4.44e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5576g00003 Myb_DNA-binding 1.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5576g00003 K09422 - gmx:100816653 458.373