Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5575g00010 ATGTTTCCCATAGCTTCCCCATCATCTTCTTCTTCCAAGAAATATGATGTGTTTCTGAGTTTCAGAGGAGAGGACACTCGCAGATCCTTCACCAGCCATCTCCATACTGCCTTGTGCCGCAGAGATATTGAGACATACATTGATAATGAGCTCCCAAAAGGCGATGGCATCTCTCAATCACTCATGGAAGCAATTCAGGATTCATCCATCTCTGTGGTGGTCTTCTCTGAAAACTACGCCTCCTCCAAATGGTGTTTAAATGAGCTCCTTCAGATCCTTCACTGCAAACAACAGCAGGGACAGATTGTTGTTCCTATCTTCTATGAAATCGACCCATCTCATGTGCGCAATCAGAAAGGAACTTATGAGAAAGCATTCACAGAGCATTTGGAGAAAAACCAAGAGAAGGTGGACAAGTGGAGACAAGCACTTTTTGAGATTGCAAGTCTAGCAGGATGGGACTCCCGCAACTACAGGGATGAAGTAGAACTCATTCAAAATATTGTCACGGACATCAACAAAAAACTAAACCATGGGTCCCCAACAACTATACTAGAAGATATTGTTGGAATTGATGAGAATTTGGATCATATTGAGTCGTTACTAGAAGAATCCTCAACAATTGGGATTTGGGGGATGGCTGGGATAGGCAAAACAACAATGGCTACGGTTTTGTTTGCCAAGCTCCACTCTCAATTTGATAGTTGCTGCTTCTTGGAAAATTTTAGGGAAAAATATGAGAAGTCTAGGTTAGAACATGTACGTGACGAACTTCTCCGAAAACTATTAAAGGATACATCTCTTGGAAGACTCAATAGTAGAAAAGTTTTGATTGTACTTGATGATGTTAGCACCACCCAGCAGTTAGATGAGTTGAAAAGGGAAGTTTCTTGTTTGGGACATGGTAGTAAAGTTATCATAACAAGTAGAGATAAGCATGTGCTTAATGGAAGAGTTGAGAGAATACATGAGGCCAAGGAATTGAGCTACAACAATTCACTTAAGCTTTTCAACCTTCGAGCCTTCCACAAAGATGGTTATGAAAGTGAATATGAAAAACTAGTTGAAAGAGCTCTTGCTTATGCCCAAGGCGTTCCATTAGCCTTAACCATTTTGGGTTCATTCCTTTATTCCAGAACTGTAAAAGAATGGGAAAGTGCATTGAAGAAATTAGAAAGAACACCCAATCAAGATATTCAGGCTGTGTTAAAATTGAGCTATGATGGGCTTGATCACGAGGACAAACAGATATTTTTAGACATTGCTTGTTTTTTCAAAGGTGAATTAAGAAGATATGTGGAAGCAATACTAGAGAACTGTGGCTTTGCGGCAAGCATTGGTTTGAGAACCCTTATGGATAAGGCGTTGATAAGTGTCAGTTGTGATGTAGTATGGATGCATGATTTAATTCAATCAATGGCTTTCGATATTATTCATCAAGAGTGCATCACAAATCCTGGAGGACGTAGTCGACTATGGAAGCCTGATGAGATCTACGATGTTCTGAAAAATGATCGAGGAACTGAGGCAATTCAAACCATAAGTTTAGATTTGTCTCAAATTAAAGATTTGGAGTTGAGTAATGATGTCTTCAGAAAGATGCCTAATTTAAGGGCTTGA 1620 0.3969 MFPIASPSSSSSKKYDVFLSFRGEDTRRSFTSHLHTALCRRDIETYIDNELPKGDGISQSLMEAIQDSSISVVVFSENYASSKWCLNELLQILHCKQQQGQIVVPIFYEIDPSHVRNQKGTYEKAFTEHLEKNQEKVDKWRQALFEIASLAGWDSRNYRDEVELIQNIVTDINKKLNHGSPTTILEDIVGIDENLDHIESLLEESSTIGIWGMAGIGKTTMATVLFAKLHSQFDSCCFLENFREKYEKSRLEHVRDELLRKLLKDTSLGRLNSRKVLIVLDDVSTTQQLDELKREVSCLGHGSKVIITSRDKHVLNGRVERIHEAKELSYNNSLKLFNLRAFHKDGYESEYEKLVERALAYAQGVPLALTILGSFLYSRTVKEWESALKKLERTPNQDIQAVLKLSYDGLDHEDKQIFLDIACFFKGELRRYVEAILENCGFAASIGLRTLMDKALISVSCDVVWMHDLIQSMAFDIIHQECITNPGGRSRLWKPDEIYDVLKNDRGTEAIQTISLDLSQIKDLELSNDVFRKMPNLRA 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5575g00010 539 Pfam NB-ARC domain 201 407 IPR002182 GO:0043531
Pral5575g00010 539 SMART till_3 14 150 IPR000157 GO:0007165
Pral5575g00010 539 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 538 IPR044974 GO:0006952
Pral5575g00010 539 Gene3D - 175 321 IPR027417 -
Pral5575g00010 539 Pfam TIR domain 14 182 IPR000157 GO:0007165
Pral5575g00010 539 FunFam Disease resistance protein (TIR-NBS-LRR class) 11 178 - -
Pral5575g00010 539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 421 IPR027417 -
Pral5575g00010 539 Gene3D - 11 174 IPR035897 -
Pral5575g00010 539 Gene3D - 327 411 IPR042197 -
Pral5575g00010 539 PRINTS Disease resistance protein signature 207 222 - -
Pral5575g00010 539 PRINTS Disease resistance protein signature 270 284 - -
Pral5575g00010 539 PRINTS Disease resistance protein signature 362 376 - -
Pral5575g00010 539 PRINTS Disease resistance protein signature 516 532 - -
Pral5575g00010 539 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 153 IPR035897 -
Pral5575g00010 539 SUPERFAMILY "Winged helix" DNA-binding domain 398 503 IPR036390 -
Pral5575g00010 539 ProSiteProfiles TIR domain profile. 13 176 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5575g00010 Pral-Chr5575 156854 160747 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5575g00010 7 538 WRKY Transcription Factor Family AT4G12020 32.188 1.71e-72 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5575g00010 - - pcin:129287787 656.751