Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5575g00006 ATGGTTTCTGCTTCCTCAAGCTCTGGCTCTAGTTTGAATGCTCCAAGAAAGTATGATGCGTTTGTAAGTTTTAGAGGCGAAACCCGCAACAACTTCACCAGCCATCTTCATGCTGCCCTCAACCGAGAATTTGTTTTGTCCTTTCGTGACGATAAGCAGATAGAGAAAGGTGATGAAATCACGCCATCACTCATCCACGCAATCAAGGATTCCAGTGTATCTATCATAGTCTTCTCAAAAGACTACGCTTCCTCAAGATGGTGCCTGGATGAACTCGCCCAAATCATGCGGTGCAGAAAGGATGAGGGCCAGTTTGTTTTACCCATCTTCTACAAAGTTGACCCCTCACATATTCGAAAGCAGACCGGAGCTTATGAGAGGGCATTTGAACAACATGAGAAAGATTTCATGCATGATCCAGAAAGAGTGAACGGGTGGAAAGCAGCTCTTTCCGAAGCTGGCTCTTTAAGCGGCAGGCACTGCCAAGACTTCACGGATGAATCCAATTTAATTCAAGGAATTGTCACTGATGTCAACACAAAACTGGAACAAATACATAATTGTCGACAAACATTAAAAGATGTGATTGGAAGGGATGAAATGATCAAACCCATTGAAGAGTTATTGGGAAAATCTCAGAGAGTTGGAATTTGGGGGATGGGCGGTGTGGGTAAGACCACAATGGCAAATGCTGTATTTGCCAAATTATCTTCTCAGTATGACACTTGTTGCTTCTTAGAAAATATTAGGGAAAAAACAGAAAAAAGTGGATTGGGAAGTGTTTGTAGCTATCTTGTCTCGAAGCTGCTAGGGCAAGATATGCCAAGTAACCCATCAAATGGTTTAAGAAATGCCTTTGTTACCAGAAGGCTTGGTAAGAAAAAAGCTTTAGTTGTGCTTGATGATATTGATCGTTCTGACCAATTAGAGGGTTTGCAAGATAACATGTGCAATTTCTTAGGAGAAGGTAGTAAAGTTATTACAACAACAAGAAATAGGTAA 1002 0.4142 MVSASSSSGSSLNAPRKYDAFVSFRGETRNNFTSHLHAALNREFVLSFRDDKQIEKGDEITPSLIHAIKDSSVSIIVFSKDYASSRWCLDELAQIMRCRKDEGQFVLPIFYKVDPSHIRKQTGAYERAFEQHEKDFMHDPERVNGWKAALSEAGSLSGRHCQDFTDESNLIQGIVTDVNTKLEQIHNCRQTLKDVIGRDEMIKPIEELLGKSQRVGIWGMGGVGKTTMANAVFAKLSSQYDTCCFLENIREKTEKSGLGSVCSYLVSKLLGQDMPSNPSNGLRNAFVTRRLGKKKALVVLDDIDRSDQLEGLQDNMCNFLGEGSKVITTTRNR 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5575g00006 333 ProSiteProfiles TIR domain profile. 16 182 IPR000157 GO:0007165
Pral5575g00006 333 Pfam TIR domain 17 188 IPR000157 GO:0007165
Pral5575g00006 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 332 IPR027417 -
Pral5575g00006 333 Gene3D - 15 179 IPR035897 -
Pral5575g00006 333 SMART till_3 17 156 IPR000157 GO:0007165
Pral5575g00006 333 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 158 IPR035897 -
Pral5575g00006 333 PRINTS Disease resistance protein signature 214 229 - -
Pral5575g00006 333 PRINTS Disease resistance protein signature 290 304 - -
Pral5575g00006 333 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 184 - -
Pral5575g00006 333 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 333 IPR044974 GO:0006952
Pral5575g00006 333 Pfam NB-ARC domain 208 333 IPR002182 GO:0043531
Pral5575g00006 333 Gene3D - 180 333 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5575g00006 Pral-Chr5575 106816 110313 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5575g00006 12 333 WRKY Transcription Factor Family AT4G12020 30.183 2.28e-33 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5575g00006 - - pcin:129288608 328.946