Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5575g00001 ATGAACTGCACCCTGAAAAAAACTACGGTGGTTTCTGCTTCCTCAAGATCTGGCTCTAGGCCAAATGCTCCGAGAAAGTATGATGTATTTGTAAGTTTTAGAGGCGATACCCGCAACAACATCACCAGCCATCTTCATGCTGCTCTCAAACGAGAATTCATTTTGTCCTTTCGTGACGATAAGCAAATAGAGAAAGGTAATGAAATCACACCATCGCTGATCCAAGCAATCAAGGATTCCAGCGTATCTATAATAGTCTTCTCAAAAGACTATGCTTCCTCAAGATGGTGCCTGGATGAACTCGCCCAAATCATGCAGTGCAGAAAGGATGAGGGCCAGTTTGTTATCCCCATCTTCTACAAAGTTGACCCCTCACATGTTCGAAAGCAGACCGGAGTTTATGAGAAGGCATTTGAACAACATGAGAAAGATTTCATGAATAACCCAGAAAGGGTGAATAGATGGAAAGCAGCTCTTTCTGAAGCTGGCTATTTAAGCGGCAGGCACTACCATGACTTCACGGATGAATCCAATTTAATTCAAGAAATTATCACTGATATTAGCACGAAACTAGAACAAATACATAATCGTGGACAAACATTAAAAGATGTGGTTGGAATGGATGAAATGATCGAACCCATTGAAGAGTTACTAGGAAAATTTCAAAGAGTTGGAATTTGGGGGATGGGCGGTGTAGGGAAGACCACAATGGCAAATGCTGTATTTGCCAAATTATCTTCTCGGTATGACAATTGCTGCTTCTTGGAAAATATTAGGGGAAAAACAGAAAAACTTGGATTGGAAAGTGTTTGTAGCTCTCTTGTCTCGGAGCTGCTAGGGCAAGATATGCCAAGTAACACGTCAAATGTTTTAAGAAATGCCTTTGTTGCCAGAAGGCTCGGTAGGCAAAAAGCTATGGTTGTGCTTGATGATATTGATAGTTTTGACCAATTTGAGGGTTTGCAGGAAAACATATGTAATTTCTTAGGAGAAGGCAGTAAAGTTATTATAACAACAAGAAATAGGAAATTGCTTCAGGGAAAAGGTTATGAAATACTTGAGGCCAAGGGATTGAGTTATCACAATTCGCGTCAACTTTTCATCCGCAAGGCCTTTGGATCAGACTATCCAGAACACGGATATGAACAGCTCATAGAAGGGTTTGTAGAATATACTCGGCACAATCCCTTGGCTTTAACAGTTCTGGGTTCATATGTTCACTCTGAAGATAAAAGGTTATGGGATGGTGTGTTGACAAAACTACGAGCAAGGAGTCCAAATGACGAAATTCAAAAGGTGTTGAGATTGAGTTATGATGGATTAGCCTATGAAGAGAAGCAAACTTTCCTAGACATTGCATGTTTCTTAAAGGGTGAAAATGAAGCATTTGTAGAAGAGCTATTAAAGAGCTATGAATTCCATCCAACTGTTGGCATGCAAAACCTTAAAGATAAGGCTCTGATTGTCACAACCAATGGAAAAGTTGAGATGCATGACTTAATACAGGAAATGGGCTTACAAATTGTTCGTGAAGAGAATATCAGTGAACCTGGAAAAAGGAGTAGATTATGGGATCCTAGCGAAATCTATGATGTATTGAAAAATTGTGAGATGAATTGGGTATTGCAGCAGGTCTTGAGTCAATTTCTACCAAAATAA 1659 0.3972 MNCTLKKTTVVSASSRSGSRPNAPRKYDVFVSFRGDTRNNITSHLHAALKREFILSFRDDKQIEKGNEITPSLIQAIKDSSVSIIVFSKDYASSRWCLDELAQIMQCRKDEGQFVIPIFYKVDPSHVRKQTGVYEKAFEQHEKDFMNNPERVNRWKAALSEAGYLSGRHYHDFTDESNLIQEIITDISTKLEQIHNRGQTLKDVVGMDEMIEPIEELLGKFQRVGIWGMGGVGKTTMANAVFAKLSSRYDNCCFLENIRGKTEKLGLESVCSSLVSELLGQDMPSNTSNVLRNAFVARRLGRQKAMVVLDDIDSFDQFEGLQENICNFLGEGSKVIITTRNRKLLQGKGYEILEAKGLSYHNSRQLFIRKAFGSDYPEHGYEQLIEGFVEYTRHNPLALTVLGSYVHSEDKRLWDGVLTKLRARSPNDEIQKVLRLSYDGLAYEEKQTFLDIACFLKGENEAFVEELLKSYEFHPTVGMQNLKDKALIVTTNGKVEMHDLIQEMGLQIVREENISEPGKRSRLWDPSEIYDVLKNCEMNWVLQQVLSQFLPK 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5575g00001 552 SUPERFAMILY "Winged helix" DNA-binding domain 428 534 IPR036390 -
Pral5575g00001 552 Pfam TIR domain 26 206 IPR000157 GO:0007165
Pral5575g00001 552 FunFam Disease resistance protein (TIR-NBS-LRR class) 23 193 - -
Pral5575g00001 552 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 167 IPR035897 -
Pral5575g00001 552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 452 IPR027417 -
Pral5575g00001 552 Gene3D - 357 442 IPR042197 -
Pral5575g00001 552 Gene3D - 24 192 IPR035897 -
Pral5575g00001 552 Gene3D - 193 351 IPR027417 -
Pral5575g00001 552 ProSiteProfiles TIR domain profile. 25 191 IPR000157 GO:0007165
Pral5575g00001 552 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 534 IPR044974 GO:0006952
Pral5575g00001 552 PRINTS Disease resistance protein signature 223 238 - -
Pral5575g00001 552 PRINTS Disease resistance protein signature 299 313 - -
Pral5575g00001 552 PRINTS Disease resistance protein signature 392 406 - -
Pral5575g00001 552 SMART till_3 26 165 IPR000157 GO:0007165
Pral5575g00001 552 Pfam NB-ARC domain 219 425 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5575g00001 Pral-Chr5575 3768 6006 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5575g00001 20 535 WRKY Transcription Factor Family AT4G12020 30.740 3.19e-54 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5575g00001 - - pcin:129288608 518.85