Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5573g00001 ATGGGTGCTTCAGGAAGATGGTTGAAATCCCTCATTTCTCATAAAAAGCCCTCCTCCAATGACCCTGAGAAGGTTGGGGATAAGAGTAAGAAGAAGTGGAGGCTGTGGAGAAGCTCTTCAGAAGGTTTTGGATTTGGGTCCTCCACGAAAAGCATCAAGAAGGAACGCGAAGCTGCTTCAGAGAAGTCTGATTCATCTACGTTTGCGGTGGATGATACGCTTGCTTCTGCCATGGCTACTGTGGCAGTCCGAGCTGCTCCTAAAGATTTCATGCTAATCAAGCAGGAATGGTCTGCCATTCGGATTCAATCTGTGTTTCGAGGTTTCTTAGCTAGACGAGCTTTGAGGGCATTGAAGGCAGTGGTGAGGCTGCAAGCAATATTCAGAGGAAGGCGAGTGAGAAAGCAAGCAGCTATAACACTAAGGTGCATGCATGCTCTGGTTAAAGTTCAGGCACGTGTGAGGGCAATGAATGTAAGGATGTCTCCAGAAGGGAAGGCTGTTCAGAAATTATTAGATGATTATCGCAGGCAAGCTGAAGATCCTGTTAAGCAGGCTGAGGAAGGATGGTGTGACATTCCAGGAACTGTCGATGAAGTTAAAGCAAAGATACAAATGAAGCAAGAGGCGGTCATCAAAAGGGAGAGAGCAATGGCTTATTCTCTTTCTGCTCAGGCACGAGTGGGTGGAAGTCCAAAAGCAAGAGGCACAAAGACAGTGAACAAGAGCTTGTTAGAGCAATGGATGACAGTGAAGCCATGGGAAAGCAGGTTGATGGACGGTGGTAACTATTATGACTCAACTGACATTATCACTCCATTGTCCAGGAAAAGCAATGATCTTGTTCAAGAACAAGGGTTGATCAAAGCAAGAAGGAATGGTGTGACCGAAATTATTTCCAGTAGGTCTCTTACAACAAGCCAATCGACTCTGACATCATCATCATCATCTTCAACCTCGAGTTCTGAAAGCTGCACTTTTGATGATAGCCCTGAATCATCAACTTCATACACATCCATATCACATTGTGTACCATTTAGCAGCAATACTCTTGCGGAGGAAACGAGGGAGGAAAAGACTTTTCATAGACCTAGCTATATGAATCTGACAGAGTCAACTAGGGCCAAACAAAGAGTTTGTCGTTACTTGAATATGAGTGGAGATTGTAGGAGCATTTGTTCTGGTTCTGATCCTTGTGTTAATTTGTGGAAAGGTGTTTGTGCAACACCTGAAAGGTTTTCTTACCAACAGAGAAACTTTGCGAGACAACAAAGGTTGGCTTAG 1284 0.4447 MGASGRWLKSLISHKKPSSNDPEKVGDKSKKKWRLWRSSSEGFGFGSSTKSIKKEREAASEKSDSSTFAVDDTLASAMATVAVRAAPKDFMLIKQEWSAIRIQSVFRGFLARRALRALKAVVRLQAIFRGRRVRKQAAITLRCMHALVKVQARVRAMNVRMSPEGKAVQKLLDDYRRQAEDPVKQAEEGWCDIPGTVDEVKAKIQMKQEAVIKRERAMAYSLSAQARVGGSPKARGTKTVNKSLLEQWMTVKPWESRLMDGGNYYDSTDIITPLSRKSNDLVQEQGLIKARRNGVTEIISSRSLTTSQSTLTSSSSSSTSSSESCTFDDSPESSTSYTSISHCVPFSSNTLAEETREEKTFHRPSYMNLTESTRAKQRVCRYLNMSGDCRSICSGSDPCVNLWKGVCATPERFSYQQRNFARQQRLA 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5573g00001 427 ProSiteProfiles IQ motif profile. 95 123 IPR000048 GO:0005515
Pral5573g00001 427 MobiDBLite consensus disorder prediction 16 33 - -
Pral5573g00001 427 Pfam IQ calmodulin-binding motif 97 116 IPR000048 GO:0005515
Pral5573g00001 427 Pfam IQ calmodulin-binding motif 119 136 IPR000048 GO:0005515
Pral5573g00001 427 ProSiteProfiles IQ motif profile. 119 146 IPR000048 GO:0005515
Pral5573g00001 427 MobiDBLite consensus disorder prediction 1 33 - -
Pral5573g00001 427 SMART iq_5 94 116 IPR000048 GO:0005515
Pral5573g00001 427 SMART iq_5 117 138 IPR000048 GO:0005515
Pral5573g00001 427 Gene3D - 92 142 - -
Pral5573g00001 427 MobiDBLite consensus disorder prediction 302 328 - -
Pral5573g00001 427 PANTHER IQ-DOMAIN 5-RELATED 1 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5573g00001 Pral-Chr5573 12963 15146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5573g00001 1 403 IQD Protein Family AT1G72670 43.119 1.60e-93 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5573g00001 - - ahf:112710157 375.555