Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5568g00037 ATGGCAACGTTTGCAGGTACTACCCAGAAGTGTAAGGCCTGTGAGAAAACAGTTTATTTGGTTGATCAGCTCACTGCTGACGACAAAGTTTACCACAGATTTTGCTTCAGATGCCATCACTGCAAGGGTACCCTCAAGCTGAGTAATTATTGTTCCTTTGAGGGCGTTTTATACTGCAAGCCTCATTATGATCAACTCTTAAAGAAGACTGGAAGCTTAGAAAAAAGTTTCGAAGGTATTCAAGAACTGCTAGAGTTGTCAGGTCTGCTGATCAGGCACAAACCAACGGCAAGGTTTCTAGATTATTTGTTGGAACTCAGGACAAGTGTGTTGCTTGCAAGAAGACAGTCTACCCAATAG 360 0.425 MATFAGTTQKCKACEKTVYLVDQLTADDKVYHRFCFRCHHCKGTLKLSNYCSFEGVLYCKPHYDQLLKKTGSLEKSFEGIQELLELSGLLIRHKPTARFLDYLLELRTSVLLARRQSTQ 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5568g00037 119 CDD LIM1_SF3 7 69 - -
Pral5568g00037 119 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Pral5568g00037 119 FunFam LIM domain and actin-binding 1 5 75 - -
Pral5568g00037 119 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Pral5568g00037 119 SMART lim_4 10 62 IPR001781 -
Pral5568g00037 119 Gene3D Cysteine Rich Protein 5 75 - -
Pral5568g00037 119 PANTHER OS06G0237300 PROTEIN 4 79 - -
Pral5568g00037 119 Pfam LIM domain 11 64 IPR001781 -
Pral5568g00037 119 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Pral5568g00037 119 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5568g00037 Pral-Chr5568 204232 207362 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral5568g00037 LIM 3.4e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5568g00037 K09377 - gmx:100500501 162.155