Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5568g00021 ATGGATATAGTCATCAAGGAAAAACCAACAAAGACAGCTCACTGGCCGTCACCGCGCAACAAGAAGAAGAAGGTGAAGATGAACAGATACGCAGCTTCTTCTTCGTCTCGATTATTACGAAGCCATTTCTCCAAGTCTTTCTCCCTCAGAAAGAAGGTTCCCTGGTGGTACCAAATCCTCGATCCCAAATCCGAATTCGTCGACCGATGGAATCGCACCTTCCTCTACGCCAGCTTCCTTGCCCTCTTCCTCGACCCCCTCTATTTCTATTTCCCCATCATCGGCAAAGAGAGTTGCATGAAAATCGACTTGGTCCTCGGCGTCTTCATCACTTTCTTCCGCACCCTCAACGATATCTTCTTCGTCTTCCACATTGTTCTCAAATTCCGTACGGCCTACTTTTCTTCCCACTCTTTTGGCCGCGGTGATCTCATCACTGACCCCTACCTCATCGCCATTCGCTATCTCAAGACCGATTTCTGCTTTGATTTTCTCGCATGCCTTCCTCTCCCTCAGATCGTGATTTGGTTCTTGATTCCCGCATTCAAAGATACGACAGCAGCTCATGCGAATCATACCCTTTCTCTCATGGTTCTTCTCCAGTATATTCCTCGATTCTTCCAGATCTTCCCTCTTCAACGCCGGATCATAAAAACCAGCGGCCTTATAGCCAAGACGGCTTTGGCAGGGTCTTTATACAATCTTGGTTTTTACGTGTTGGCGAGCCATGTTTTAGGGGCTGCATATTATTTGTTAGCGATTCAGCGCCAGTCTCAATGCTGGAGAGAAATTTGTGCGAAGGAAGCCAACGCAACGCACTCTCCATCTTGCTCGCCTCAATTTCTTGATTGCGACTCACTGAACGATCCCGCACGTGATGCTTGGTACCAACAAACTTACCTTACTGTCGTCTGTGATGCTAAGAATGAAGGCAGCCATTTTGAGTTTGGAATTTACGCCGACGCTTTTACTGATGAAGTTGCTACATCTAGGTTCATCGAAAGATACTTTTATTGCCTCTGGTGGGGCTTGAAGAGTCTATGTGCATATGGACAAAATCTTAATACAAGCGTCTTCGTTTCTGAATCTTTATTTGCGAGTTTCATCTGCATTGCAGGTCTAATTCTCTTTGCACTTCTCATTGGTAACATGCAGAACTATTGGCAATCTACTACTGCAAGACTTGAAGAATGGAGAATTAAACAAAGAGATACGGAAGAGTGGATGAGGCATCGTCAACTTCCGCCAGAACTGCAAGAACGTGTACGTCGGTTTGTCCAATACAAATGGCTGGCCACTAGAGGTGTAGATGAAGAAACTATTTTGCGTTCTTTACCTTTGGATCTTCGTCGTCAGATTCAGAGACATATTTGTCTTGCTCTTGTTCGTCGGGTTCCATTTTTTGGTCAAATGGATGATCAGCTGCTGGATGCCATATGTGAACGCCTTGTGTCCTCCCTGAACACAAAAGACACGTACTTAGTCAGGGAAGGAGACCCAGTGAAAGAGATGATCTTTATCATTAGAGGACAAGTGGAGAGCTCCACCACTGATGGTGGGAGATCTGGATTCTTCAACTCTATAACCCTAAGACCAGGTGACTTTTGTGGCGAAGAACTGCTGACGTGGGCTTTGGCGCCCGCTTCTAGCAGCCTTCCATCCTCCACTCGAACCGTAAAGACCCTCACTGAATTGGAAGCATTTGCACTCAGAGCTGAAGACATCAGATTCTTTGGCATCCAATTTAAGAGGCTTCATAGCAAGAGGATTCAGCATGCTTTCAGGTATTACTCTCACCAATGGAGGGCTTGGGGGGCTTGTTTTATACAAGCTGCATGGAGACGCTATGTGAAGAAGAAGTTGGCGATGGAGCTTTTGGAGAAAGAGAATCTGTTAGAATTAATAGAGTTGGACGATGGTGAAGAATTTGCTCCTGGGGTAGGGAGCTCAGCAGGGAAGGCTGCTGCTGCTACTGGTGGAAGCCTTGCGACTACACTTTGGGCTTCCAAGTTTGCTAAAACACCAGAAAAGGGGCATCATCAGAAAGTGACAATCCCTGATGAAAGCAGCCTGAAGATGCCGAAGCTGTTTAAGCCTTCAGACCCTGACTTCTCAGCAGACCACGAAGATTAG 2133 0.4637 MDIVIKEKPTKTAHWPSPRNKKKKVKMNRYAASSSSRLLRSHFSKSFSLRKKVPWWYQILDPKSEFVDRWNRTFLYASFLALFLDPLYFYFPIIGKESCMKIDLVLGVFITFFRTLNDIFFVFHIVLKFRTAYFSSHSFGRGDLITDPYLIAIRYLKTDFCFDFLACLPLPQIVIWFLIPAFKDTTAAHANHTLSLMVLLQYIPRFFQIFPLQRRIIKTSGLIAKTALAGSLYNLGFYVLASHVLGAAYYLLAIQRQSQCWREICAKEANATHSPSCSPQFLDCDSLNDPARDAWYQQTYLTVVCDAKNEGSHFEFGIYADAFTDEVATSRFIERYFYCLWWGLKSLCAYGQNLNTSVFVSESLFASFICIAGLILFALLIGNMQNYWQSTTARLEEWRIKQRDTEEWMRHRQLPPELQERVRRFVQYKWLATRGVDEETILRSLPLDLRRQIQRHICLALVRRVPFFGQMDDQLLDAICERLVSSLNTKDTYLVREGDPVKEMIFIIRGQVESSTTDGGRSGFFNSITLRPGDFCGEELLTWALAPASSSLPSSTRTVKTLTELEAFALRAEDIRFFGIQFKRLHSKRIQHAFRYYSHQWRAWGACFIQAAWRRYVKKKLAMELLEKENLLELIELDDGEEFAPGVGSSAGKAAAATGGSLATTLWASKFAKTPEKGHHQKVTIPDESSLKMPKLFKPSDPDFSADHED 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5568g00021 710 FunFam Cyclic nucleotide-gated ion channel 1 465 582 - -
Pral5568g00021 710 Gene3D - 89 390 - -
Pral5568g00021 710 SUPERFAMILY cAMP-binding domain-like 396 588 IPR018490 -
Pral5568g00021 710 ProSiteProfiles cAMP/cGMP binding motif profile. 467 552 IPR000595 -
Pral5568g00021 710 SMART cnmp_10 467 594 IPR000595 -
Pral5568g00021 710 MobiDBLite consensus disorder prediction 1 22 - -
Pral5568g00021 710 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 40 704 - -
Pral5568g00021 710 Gene3D Jelly Rolls 465 584 IPR014710 -
Pral5568g00021 710 SUPERFAMILY Voltage-gated potassium channels 62 389 - -
Pral5568g00021 710 FunFam Cyclic nucleotide-gated ion channel 1 394 458 - -
Pral5568g00021 710 Pfam Ion transport protein 70 394 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pral5568g00021 710 Gene3D Helix hairpin bin 393 458 - -
Pral5568g00021 710 MobiDBLite consensus disorder prediction 673 710 - -
Pral5568g00021 710 CDD CAP_ED 467 597 IPR000595 -
Pral5568g00021 710 Pfam Cyclic nucleotide-binding domain 490 576 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5568g00021 Pral-Chr5568 158365 161934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5568g00021 19 704 Ion Channels AT3G48010 61.341 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5568g00021 K05391 - gmx:100783672 939.488