Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5568g00019 ATGTCAACTTCAATCCCGCATGATATCCGAAAGAGTTTCCTTTTCTCTCTTCACGCATTCTCATTCCTTTCAATGATTAATGCATCCAATCAATCAGGCCGCCGTATTCTGTCATTCCCGGCGGTTCATCCCTGCGAGGGCGTGTCTCCGGCCGCCCTTCTCGCTTCTCTGATCTCTCTTTCTCAGGCTATATGCAGTTTTCAATCCAAGTTCTTCCCAACCCAACGTCGAAACTCCAGAGAAATAATTCGCCAACTTGGTATCATCCTCCTCTTCTTCGAGGAAATTCGAGACCGTGGTGTTCCGATAAGCGACTCTGTTGCTCTCTGCTTCTCCGAACTTCACCTCTGTCTCCAAAAAATTCACTTTCTACTCTCAGATTGTACTCGTGAAGGTGCTCGGCTATGGATGCTGATGAAATCGGAACACGTCGCCACTCAATTCAGGGTTCTGACTCGCGCTTTGGCCACTGCTCTTGACGTTTTGCCTCTGAGCAGCATAGAGATTTGTGATGAAGTAAAAGAGGTAGTGGAATTAGTAGCCAAGCAAGCTCAGAAAGTGAAGCTTGAACTAGACCCGCACGATGAACATGCCACCACGCAGGTCCTTTCAGTTTTGAATCAGTTCGAGAGAGGAATGGAACCCAACTTGAGCATCATGAAGCGAACCTTGAACTACTTGGGGATAAAGAATTGGAATGATTGCAACAAAGAGATTAAATTCTTGGAAGATGAAGTCAACTTCAACTCCTCCGAAGGTGACGAGGGGGAGGTCCCTTTTCTGAGTAACTTAGTTGGGTATTTATGCTATTGCAGGGTAGCGATATTCGAAACTCTGGATTTTCAACAAACCGCCACCGACCCATCGGAGACAAGATGTAGCACGGAGATGATTAACTTCTTAAACCCACAGGACTTTCGATGTCCGATCTCTTTACAACTAATGGCCGATCCTGTGACTTTATCAACGGGTCAGACGTATGATCGGGCATCCATTCAGAAATGGCTCAAAGCTGGAAACAGGACATGCCCGAAAACAGGGGAGAAGCTCACAAACACAGAGCTCGTCCCAAACACGACGCTCAGAAAGCTAATCCACCAGTTCTGTGCTGATAACGGAGTTTCCACCAGCAAGTCCGGTCACCGGAGTCGCGACATAACGAGAACCAGTGTCCCCGGCAGTACAGCTTCAGCACACGCCATGCAATTTCTTTCATGGTTCATTGCCAGGAGGCTTGTGTTCGGAACAGATGAGCAGAAAAACAAGGCAGCCTACGAAATTCGTGTTCTTGCAAGGTCCAACATTTTCAACAGAGCGTGCTTGATTGAGGTGGGAACAGTGCCTTCGTTGCTCAATCTCTTGGACACTAACGATAAATCAACGCAAGAAAACGCAATCTCTGCTCTTCTGAAGCTGGCAAAGCATACCAATGGACAGAAAACTATAATGGAAAGCGATGGATTAACGCCAATCCTTACTGTTCTCAAGAATGGAATTAGTTTGGAAGCTCGTCAAACCGCAGCTGCTATAATATTCTACCTTTCTTCCACTAAAGAAAACAGGAAAATAATCGGAGAAAACCCAGAAGCAATCCCAGCTTTGGTAGAACTAATCAAGGAAGAAACAACAGCCTTGGGGAAAAAGAACGCCACAGTCGCCATTTTTGGGCTTCTCCTGCTTCCTCAGAATCATCAAAAAGTGCTTGAAGCCAATGCTGTTCCTGCACTAGTTAACATCTTATCTTCATCAGAAAAATCTGACCTGACAACAGATTGTTTAGCAGTTCTTGCGGCGTTGGCGGAGAACGTGGAGGGAGCAAAAGCTGTGTCAAAAGCTTGTGCTTTGCCTTTGATCGTTGGGATGTTGCAGAAAATAACATGGAGGACAGGGAAAGAACACTGCGTAGCAATTTTGATGTCGCTGTGCGTTCATGTGGGAGAAGAAGTAGTGAGTATTCTGGCGAAGGATCCTTCATTGATGCCATGGCTTTACTCGCTGCTCACCGATGGAACTTCTCATGCGGCCAAGAAGGCGCGTTCTCTCATCAAACTTCTTCACGAATATAACGACACTAGAACTTCTCAGTGGCTTAGTTCCTCCGTTCTGCCAGAACGATCCCTTCACATTTGGTGA 2133 0.4637 MSTSIPHDIRKSFLFSLHAFSFLSMINASNQSGRRILSFPAVHPCEGVSPAALLASLISLSQAICSFQSKFFPTQRRNSREIIRQLGIILLFFEEIRDRGVPISDSVALCFSELHLCLQKIHFLLSDCTREGARLWMLMKSEHVATQFRVLTRALATALDVLPLSSIEICDEVKEVVELVAKQAQKVKLELDPHDEHATTQVLSVLNQFERGMEPNLSIMKRTLNYLGIKNWNDCNKEIKFLEDEVNFNSSEGDEGEVPFLSNLVGYLCYCRVAIFETLDFQQTATDPSETRCSTEMINFLNPQDFRCPISLQLMADPVTLSTGQTYDRASIQKWLKAGNRTCPKTGEKLTNTELVPNTTLRKLIHQFCADNGVSTSKSGHRSRDITRTSVPGSTASAHAMQFLSWFIARRLVFGTDEQKNKAAYEIRVLARSNIFNRACLIEVGTVPSLLNLLDTNDKSTQENAISALLKLAKHTNGQKTIMESDGLTPILTVLKNGISLEARQTAAAIIFYLSSTKENRKIIGENPEAIPALVELIKEETTALGKKNATVAIFGLLLLPQNHQKVLEANAVPALVNILSSSEKSDLTTDCLAVLAALAENVEGAKAVSKACALPLIVGMLQKITWRTGKEHCVAILMSLCVHVGEEVVSILAKDPSLMPWLYSLLTDGTSHAAKKARSLIKLLHEYNDTRTSQWLSSSVLPERSLHIW 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5568g00019 710 PANTHER U BOX DOMAIN-CONTAINING 102 689 - -
Pral5568g00019 710 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 445 487 IPR000225 GO:0005515
Pral5568g00019 710 Gene3D - 414 528 IPR011989 -
Pral5568g00019 710 FunFam RING-type E3 ubiquitin transferase 302 374 - -
Pral5568g00019 710 ProSiteProfiles U-box domain profile. 301 375 IPR003613 GO:0004842|GO:0016567
Pral5568g00019 710 Pfam Armadillo/beta-catenin-like repeat 437 473 IPR000225 GO:0005515
Pral5568g00019 710 SUPERFAMILY RING/U-box 303 375 - -
Pral5568g00019 710 Gene3D - 529 704 IPR011989 -
Pral5568g00019 710 CDD RING-Ubox_PUB 303 355 IPR045210 -
Pral5568g00019 710 Pfam U-box domain 303 372 IPR003613 GO:0004842|GO:0016567
Pral5568g00019 710 SMART arm_5 433 474 IPR000225 GO:0005515
Pral5568g00019 710 SMART arm_5 560 601 IPR000225 GO:0005515
Pral5568g00019 710 SMART arm_5 476 516 IPR000225 GO:0005515
Pral5568g00019 710 SMART arm_5 517 559 IPR000225 GO:0005515
Pral5568g00019 710 SUPERFAMILY ARM repeat 418 689 IPR016024 -
Pral5568g00019 710 SMART Ubox_2 305 368 IPR003613 GO:0004842|GO:0016567
Pral5568g00019 710 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 571 614 IPR000225 GO:0005515
Pral5568g00019 710 FunFam RING-type E3 ubiquitin transferase 382 696 - -
Pral5568g00019 710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 377 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5568g00019 Pral-Chr5568 147589 150598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5568g00019 25 710 U-box Gene Family AT1G60190 40.115 1.58e-174 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5568g00019 - - cit:102613373 881.708