Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5568g00013 ATGGCTATCAGAGGCGTTGATTTTAAGTGGTACGATGGTTTTTTCTTGTCCATGCTCGCTACCAGCGTAGTTATTGTCGCGATTAATTGGAAGCGGTATCATACCTGTACACACCCTTTGCACATATGGATTGTGGTTGACTACTCTACCGTGTTTATCTTTCGGTTGATGATGTTTGTTGATAATGGACTTTCTGCTGGAATGGGTTTAGACTTTGGGTGGCAGCAGAGATATGCTCGCTTCTGTGGAAGAGTAGTGGTCCTTTCAATCCTTGCTTTGCTTCTATATCCATTTCTATGGGCTTGGACTATCATTGGTACCCTCTGGTTCACTAGTGCCAGGAACTGTTTGCCTGAAGAGGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTCAGCTACTGTGGACTCCTTTGCGTTGCTTGCATGTCATTAGGCAAGTGGTTGGCCCGAAGACAAGCACATTTGTTACGTGCCCAGCAGGGTATTCCTGTGTCTGAATATGGAATTCTGGTGGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCTGGTCAGGAAACAAGAGGTATGGGCCAAGATGCTGGTGCATATCATCCTGGACTTTACCTAACCCCAGCTCAGAGAGAAGCAGTTGAAGCCTTAATTCAGGAGCTCCCAAAGTTCAGGTTGAAGGCTGTTCCAACTGACTGTAGTGAATGCCCCATCTGCTTAGAAGAATTCCACGAAGGGAATGAGGTCCGTGGCCTGCCTTGCGCTCATAATTTTCATGTTGAATGCATTGATGAGTGGCTTCGCCTTAATGTAAAATGTCCTCGGTGCCGCTGTTCAGTATTTCCAAATCTTGACCTTAGTGCTCTGTCCAATCTCCGTCCTGAATCAGAACGATCTTCTGCCAGTGTTGTGACAACAACGAGATATGTGAGGGGTCAACCTTCTAGTCAGAGTTATTTGTTGAGATTACAGGGTCTTCTTCGCCCAGTGCGTTCAGAAATTGCTGGGCCGGGTGGCGAGGTGGGTAATACTTTGGAAAATGCGGAGAATGGTAGTGTGCCTCAAGTGACACGAAATGCATCAATTAGAGGCCAAGGCCCTTCAGTCGAATGCATGCCCGTCAGTCTCTCCTCTGCACAAAACTAG 1143 0.4716 MAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHTCTHPLHIWIVVDYSTVFIFRLMMFVDNGLSAGMGLDFGWQQRYARFCGRVVVLSILALLLYPFLWAWTIIGTLWFTSARNCLPEEGQKWGFLIWLLFSYCGLLCVACMSLGKWLARRQAHLLRAQQGIPVSEYGILVDMIRVPDWAFEAAGQETRGMGQDAGAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHEGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPESERSSASVVTTTRYVRGQPSSQSYLLRLQGLLRPVRSEIAGPGGEVGNTLENAENGSVPQVTRNASIRGQGPSVECMPVSLSSAQN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5568g00013 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 359 IPR044793 GO:0004842|GO:0010182
Pral5568g00013 380 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Pral5568g00013 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Pral5568g00013 380 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Pral5568g00013 380 SMART ring_2 235 275 IPR001841 -
Pral5568g00013 380 SUPERFAMILY RING/U-box 217 284 - -
Pral5568g00013 380 Pfam Ring finger domain 234 276 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5568g00013 Pral-Chr5568 121091 125611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5568g00013 58 360 C3H Transcription Factor Family AT3G47990 73.529 1.22e-160 451