Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5567g00040 ATGGGTTTTTCTTCTCTGCACGTCTGCATGGAATCATCAGATCACTGGCTCCAGGGCACAATTCACGAGGAATCTGGATTGGATTCATCTTCACCGTCAGGAGACATGCTTACATGCTCCAGGCCCTTGATAGAGAGGAGGCTAAGACCTCCACATGACCAAGCCCTCAAGTGCCCTAGGTGTGACTCCACACACACCAAGTTCTGCTACTACAACAATTACAGCCTCTCTCAGCCAAGGTACTTCTGCAAAACTTGCAGAAGGTACTGGACTAAAGGTGGTACTCTCAGGAACATCCCTGTTGGTGGTGGTTGCAGAAAGAACAAGAAAGTTTCTAACAAGAAATCCAATAATGACCCATCACATAATAATCAAAACCAACCATTACAGCCTGCAGGGATAGCCACCTCTTATAATCACCATAACAACCCCAAAGACCATCTTCAACTTTCTTTCCCAGATGCGCAGTTTTCTCACATTGGTAACTTACTGGGAAACCCTAATTTCATGCTTGAGAACCCCAGGCCTATTGACTTCATGGAAAGTAGGTGGGAAGGGATAATTGGGAGTACATCTAGGAACTTCCATTTTCTGGGAAATAGTGACATGGGTATGGGAATTGAGGTCGGAGAGACTAATGGTCATCACAATGGGTTGCAGCCAAATTTTCACAGTCTTTGCTCTCCGTCGGGATTTGGGGGTATGTCATCTTTTGATGGTAATGACAATAGTGGAGGTACTTATAATATCATGGACTCTTCTTGCCAGAGACTGATGCTGCCATATGATCATGCCAATGAGGACCCAAATGCCACAATTGATGTGAAGCCAAACCCTAAGCTTTTGTCGCTTGAATGGCAGGACCAGGGTTGCTCGGATGCTGGAAAGGAGTCGTTTGGGTATCTTAACGGTCTAGGACCATGGACCGGCATGATCAACGGCTACGGTTCTTCCACGACAAACCCTCTGGTCTAA 975 0.4615 MGFSSLHVCMESSDHWLQGTIHEESGLDSSSPSGDMLTCSRPLIERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSNKKSNNDPSHNNQNQPLQPAGIATSYNHHNNPKDHLQLSFPDAQFSHIGNLLGNPNFMLENPRPIDFMESRWEGIIGSTSRNFHFLGNSDMGMGIEVGETNGHHNGLQPNFHSLCSPSGFGGMSSFDGNDNSGGTYNIMDSSCQRLMLPYDHANEDPNATIDVKPNPKLLSLEWQDQGCSDAGKESFGYLNGLGPWTGMINGYGSSTTNPLV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5567g00040 324 Pfam Dof domain, zinc finger 53 110 IPR003851 GO:0003677|GO:0006355
Pral5567g00040 324 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
Pral5567g00040 324 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 45 201 IPR045174 GO:0003700|GO:0006355
Pral5567g00040 324 MobiDBLite consensus disorder prediction 101 146 - -
Pral5567g00040 324 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Pral5567g00040 324 MobiDBLite consensus disorder prediction 117 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5567g00040 Pral-Chr5567 196498 198332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5567g00040 1 324 C2C2-Dof Transcription Factor Family AT5G62940 41.902 7.63e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral5567g00040 zf-Dof 1.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5567g00040 - - gmx:100806697 471.47