Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5567g00005 ATGAGGCCGAGACCTGGCATGGATATCAACATCGGAGGACAAATAGAGAAGGTGAATGGAAAAGAGTTGACTTATCGGGAATTTGTGAATCGTTACATGGAGAAGAACCATCCCGTGGTGCTCACAGGACTCATGGACGACTGGAAGGCTTGCAGAGACTGGGTCACCATTAATGGCCAACCCGACCTTCATTTTTGTTCTTCCCATTTTGGGAGTTCTAAAGTTCAGGTTGCAGATTGTGGCACGAGAGAATTCACAGACCAGAAAAGGGAGGAGATGCGTGTTTCAGATTTTATAAGCCGTTGGCTAGAGGGTTCACCATTAGAGCCTAATACTGAAAATGATAATAGCAATGGTCATGGCTCCGTACTGTATTTGAAGGATTGGCACTTTGTAAAGGAATATCCAGAGTATTTAGCATACATCACTCCAGTGTTCTTTCATGATGACTGGCTCAACCTCTATCTCGACTGCTACAAAATGCATATAGATCCTGATAGTTACCAACAAAATAATGAAATATGTTGCTCTGACTATCGTTTTGTTTACATGGGGGAAAAAGGATCTTGGACCCCTCTTCATGCTGATGTTTTCAGGTCATATAGTTGGTCTGCAATCTGTGGGAAGAAGAGATGGCTTTTTCTAGCTCCTCCTCAGAGTCATCTTGTATTTGACAGGAACATGAAAAGCTGTGTGTATGATATCTTTGCTGAAGTAAGCGAATCAACTTTTCCTGGCTTTAGAAAGACTATCTGGTTAGAATGCACGCAAGAAGCAGGTGAAGTTATTTTTGTTCCCAGTGGATGGTATCATCAAGTTCATAATCTGGAGGATACTATATCTATAAACCACAACTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAACTTACTTTTGAGGGACTACAATGAGGCCAAGGAAAACATTGAGGACATCAAGGATATATGTGATGATTTTGAAGGTCTCTGTCAGCGCAATCTTTTTGCCAACACAGGGATGAACTTTTATGACTTCTTTACTTTCATAACATGCTTTACCCTGGCCAACTTAGCGTTGCTTTGCCATCTAAGTGGAAAATATGGAAGCCCCACTGAAAGTTCACTGGCAATCACTCAACATTTAGTTTTCAATCTTGGATCAGTGAGGAAGGTTGCATTGGAGATGAAAAACATGCATGCTCTTGGAGGAAATCATGACTGCTTCCTGGACATTATCAAAACATCTGAAGATCCTAGGTTTTCTAAGTTGTGTGCACGTTTGAGAAGAACATATGTGACGATACATGAGCAACCTTTTTTGTCTTTTGAATTTGAGAAATCTGCAGTTGATTATCTGATGGGCCTTAATGTTTTGAAAGCATGTTCTTCTTCTCGGATCCACACACCCGAAGACCTTATTAAACTTATAGATAATGCTGTTTCAGAGCTTGGTGACAGTTATACTCAGCAGCTGTCTGCATTACATGTCAATTGA 1476 0.4092 MRPRPGMDINIGGQIEKVNGKELTYREFVNRYMEKNHPVVLTGLMDDWKACRDWVTINGQPDLHFCSSHFGSSKVQVADCGTREFTDQKREEMRVSDFISRWLEGSPLEPNTENDNSNGHGSVLYLKDWHFVKEYPEYLAYITPVFFHDDWLNLYLDCYKMHIDPDSYQQNNEICCSDYRFVYMGEKGSWTPLHADVFRSYSWSANXCGKKRWLFLAPPQSHLVFDRNMKSCVYDIFAEVSESTFPGFRKTIWLECTQEAGEVIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKENIEDIKDICDDFEGLCQRNLFANTGMNFYDFFTFITCFTLANLALLCHLSGKYGSPTESSLAITQHLVFNLGSVRKVALEMKNMHALGGNHDCFLDIIKTSEDPRFSKLCARLRRTYVTIHEQPFLSFEFEKSAVDYLMGLNVLKACSSSRIHTPEDLIKLIDNAVSELGDSYTQQLSALHVN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5567g00005 492 FunFam JmjC domain-containing protein 4 9 289 - -
Pral5567g00005 492 Pfam Cupin-like domain 27 287 IPR041667 -
Pral5567g00005 492 Coils Coil 304 324 - -
Pral5567g00005 492 SUPERFAMILY Clavaminate synthase-like 5 316 - -
Pral5567g00005 492 ProSiteProfiles JmjC domain profile. 132 304 IPR003347 -
Pral5567g00005 492 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 16 341 - -
Pral5567g00005 492 Gene3D Cupin 6 289 - -
Pral5567g00005 492 SMART cupin_9 124 304 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5567g00005 Pral-Chr5567 42259 46970 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5567g00005 13 296 Glycosyltransferase AT1G78280 25.000 7.49e-17 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pral5567g00005 Cupin_8 2.2e-24 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5567g00005 - - gsj:114409851 716.842