Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5567g00004 ATGACTGTAAATCCATGGACCCCCTTCTTCCTCTGCTTCTCTCTTTCACTTCTTCATCATTCTTTTGTAGCTTTTGCCGTAAACTCGCAAGGAGAAGCTCTTCTTTCATGGAAGAGAACCCTCAAGGGATCCCTGGAGCTGTTGAGCAATTGGAACCCAAATGACAATACACCATGTGACTGGTTTGGAGTTAACTGTAACTCCAACGACGAGGTTGTGAAATTGGATCTGAGGTATGTGGATTTGGTTGGGACACTTCCTTCTAATTTCACCTCATTGCTTTCCCTGAACGAGCTAGTCCTCACGGGAACGAACATTACCGGTTCAATTCCGAAAGAAATAAGCACTCTTAGCGAGCTCGACTACTTGGACTTGAGCCACAATGCCTTGACGGGTGAAATCCCAAGTGAACTCTTCTTCTTGACAAAGCTTAAGCAACTCCATCTGAACTCAAACCAGCTCGTTGGTTCAATTCCGGATGCAATCGGGAACCTCACAGAGTTGACGCGGCTGGTTTTATATGACAATCAACTAGGTGGTGAAATTCCCAGAACCATTGGTAACTTGGGGAACCTGCAAGTGATCAGAGCTGGAGGAAACAAGAACCTTCAAGGCATCTTGCCCCCCGAAATTGGCAATTGTACCAATTTGGTCATGTTGGGTTTGGCTGAAACTAGTATCTCAGGTTTTCTTCCTCCGACTCTTGGCCTTCTTAAGAAGCTTGACACTCTTGCAATCTACACTTCACTTCTCTCTGGCCAAATTCCTCCCGAACTCGGAGATTGCAATGAGCTTCAGAACATTTATCTGTACGAGAATTCTCTCTCAGGATCCATACCAAGTAGACTGGGCAATCTTAGAAACCTCAAAAATCTTCTACTGTGGCAAAACAATCTCGTTGGCAGCATCCCACCAGAGATTGGAAATTGCTACCAGTTATCCGTCATTGACATTTCAATGAACTCGCTTGTTGGAAGCATTCCCAAAAGTTTTGGAAATTTGACGCTGCTAGAGGAACTTCAACTCAGCGTCAATCAGATTTCGGGTCAGATCCCAACAGAGTTGGGGAACTGTCTGCTACTCTCTCACATTGAGCTGGACAACAATCTAATCACGGGTACAATACCTTCTGAATTTGGGAGCCTTAAGAATCTAACTTTGTTGTTCTTGTGGCACAACAAGCTCGAAGGAACTATACCATCTTCGCTTTCGAGTTGTCAAAATCTGGAAGCAGTGGATCTGTCACAGAATGGATTGACCGGTTCCATACCGAAGGGGATATTCCTGCTCAAGAATCTGAACAAGCTTTTACTGCTGTCTAACAATCTCTCCGGGAATATAGCCCCTGATATTGGGAACTGCACGTCTCTGATTCGGTTCCGAGCCAGCAACAATAAAATCACAGGGACCATTCCACCAAATATTGGAAATCTGAAGAACTTGAATTTCTTGGATCTTGCAAGCAATCGCATTTCAGGAGTTATTCCAGAAGAGCTCTCAGGCAGTCGGAATCTTGCATTTCTGGACTTCCATTCCAACTTGATATCAGGAAGCTTGCCGGAAAGTCTCAGCCAGCTGGTCTCGCTCCAATTTATTGATGTCTCCGATAACATGATTGAAGGTAAACTAAGCCCAAGTCTTGGAAAGCTCGGCGCACTCACCAAGCTCATCCTCAGAAAAAATCATATCTCCGGGTCAATTCCCAGTGAATTTGGTTCATGTGCGAAGCTGCAATTATTGGACCTCAGTAGCAATGAACTCTCAGGCAAAATCCCGGGTAGTCTAGGTAACATTCCAGCGCTCGAAATCACAATGAACCTCAGCTGGAATAAGTTCAGTGGCGAGATCCCGAGGGAGTTTTCTGCATTGAGCAAACTTGGAATTTTGGACATATCGCACAACAATCTCACCGGTGGCCTCCAGTATCTCGAGGACCTCCAAAATCTTGTGGTCCTCAACGTCTCATTCAACAATCTCTCGGGTCGCATGCCAGACAAGCCTTTCTTCTCAAAGCTTCCTCTCAGTGTCCTCGATGGGAACCCATCGCTCTGCTTCCCTGGCAACCGATGCCCAGGAGATGTTTCAGAACGATCAATTCGGCGGACAAAGGCGGCGCGTGTAGCCATGGTGGTACTTCTGTGCACTGCGTGCTTGCTTTTCCTCACAGCCTTGTACGTCGTCGTTGCCGCGAAAAGACGTGGGTTCCCGGAGGACGGTCTGGACCTCAACGTTGGGGATAGCGACGTGGAGATGGGCCCACCCTGGGAGGTGACACTCTATCAGAAGCTCGACCTGTCAATCTATGACGTGGCAAGATGCCTGACAGTTGGCAACGTAATCGGGCGCGGACGATCCGGCGTTGTTTATAGAGTAGACCTCCCGTCGGGATTAACCATCGCCGCGAAAAGATACAGATTATCAGAGAAATTCGCAGCCTCCGCATTCTCCTCCGAGATTGCCACGCTGGCAAGAATACGGCACCGGAATATTGTACGGCTACTCGGTTGGGCGGCGAACCGAAAAACCAAATTACTGTTGTATGATTATTTACCTAATGGTAATCTAGATACGCTCCTGCACGAGGGTTGCACAGGATCAGTGGAGTGGGAGACACGGTTCAGGATAGCACTGGGGGTGGCTGAAGGCTTGGCTTATCTGCACCATGACTGCGTGCCGGCTATCTTGCACCGGGACGTCAAGGCGCAGAACATTTTGTTGGGAGACACATACGAACCGTGTTTGGCAGATTTTGGATTTGCGAGAATGGTGGATGATGACGATCACAGTCCGTTTTCCGTTAATCCACAGTTCGCGGGTTCTTACGGCTACATTGCGCCGGAATATGGATGCATGGTGAGGATTAGAGAGAAGAGCGATGTGTACAGCTTCGGAGTGGTGCTGTTGGAGATAATAACGGGGAAAAGGCCGGTGGACGCATCATTTGCGGAGGAGGGGCAGCACGTGGTTGGGTGGGTGAGGCAGAGGCTGAAGAGCAAGGGGGACCCGGTGGAGATTGTGGATTCTAAGCTGCGGGGGCTTCCAGACACTCAAATCCAAGAGATGCTTCAAGCTGTGGGCATTGGTCTCTTGTGTAGCAGTCAGCGTCCCGAGGATCGCCCCACTATGAAGGATGTCACGGCATTATTGAGAGAGATCAGACACTGCGATCCTCATGATCATCACCCCCACAAGCCTACTGCTTTTGCCGATTCCCTTTCCCCGAAAACGACGCCTCACCCCTCGTCGTTTTATTATTCCTCATCCTCCAACTTGTCGTTTCCTCCGCCCCCTCCTCACTTGCTCCTGCTTCACTCCTCTTCCCATTCTTCATCCAACTTCCCCGCTTATTCTTCTTCTTCTCTTGCCGCTTACCACCCCCAACCTCCCACGAATAAATAA 3399 0.4866 MTVNPWTPFFLCFSLSLLHHSFVAFAVNSQGEALLSWKRTLKGSLELLSNWNPNDNTPCDWFGVNCNSNDEVVKLDLRYVDLVGTLPSNFTSLLSLNELVLTGTNITGSIPKEISTLSELDYLDLSHNALTGEIPSELFFLTKLKQLHLNSNQLVGSIPDAIGNLTELTRLVLYDNQLGGEIPRTIGNLGNLQVIRAGGNKNLQGILPPEIGNCTNLVMLGLAETSISGFLPPTLGLLKKLDTLAIYTSLLSGQIPPELGDCNELQNIYLYENSLSGSIPSRLGNLRNLKNLLLWQNNLVGSIPPEIGNCYQLSVIDISMNSLVGSIPKSFGNLTLLEELQLSVNQISGQIPTELGNCLLLSHIELDNNLITGTIPSEFGSLKNLTLLFLWHNKLEGTIPSSLSSCQNLEAVDLSQNGLTGSIPKGIFLLKNLNKLLLLSNNLSGNIAPDIGNCTSLIRFRASNNKITGTIPPNIGNLKNLNFLDLASNRISGVIPEELSGSRNLAFLDFHSNLISGSLPESLSQLVSLQFIDVSDNMIEGKLSPSLGKLGALTKLILRKNHISGSIPSEFGSCAKLQLLDLSSNELSGKIPGSLGNIPALEITMNLSWNKFSGEIPREFSALSKLGILDISHNNLTGGLQYLEDLQNLVVLNVSFNNLSGRMPDKPFFSKLPLSVLDGNPSLCFPGNRCPGDVSERSIRRTKAARVAMVVLLCTACLLFLTALYVVVAAKRRGFPEDGLDLNVGDSDVEMGPPWEVTLYQKLDLSIYDVARCLTVGNVIGRGRSGVVYRVDLPSGLTIAAKRYRLSEKFAASAFSSEIATLARIRHRNIVRLLGWAANRKTKLLLYDYLPNGNLDTLLHEGCTGSVEWETRFRIALGVAEGLAYLHHDCVPAILHRDVKAQNILLGDTYEPCLADFGFARMVDDDDHSPFSVNPQFAGSYGYIAPEYGCMVRIREKSDVYSFGVVLLEIITGKRPVDASFAEEGQHVVGWVRQRLKSKGDPVEIVDSKLRGLPDTQIQEMLQAVGIGLLCSSQRPEDRPTMKDVTALLREIRHCDPHDHHPHKPTAFADSLSPKTTPHPSSFYYSSSSNLSFPPPPPHLLLLHSSSHSSSNFPAYSSSSLAAYHPQPPTNK 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5567g00004 1132 SMART serkin_6 774 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5567g00004 1132 MobiDBLite consensus disorder prediction 1079 1132 - -
Pral5567g00004 1132 ProSitePatterns Protein kinases ATP-binding region signature. 780 802 IPR017441 GO:0005524
Pral5567g00004 1132 SUPERFAMILY RNI-like 267 639 - -
Pral5567g00004 1132 Pfam Leucine rich repeat 287 347 IPR001611 GO:0005515
Pral5567g00004 1132 Pfam Leucine rich repeat 480 539 IPR001611 GO:0005515
Pral5567g00004 1132 Pfam Leucine rich repeat 72 130 IPR001611 GO:0005515
Pral5567g00004 1132 Pfam Leucine rich repeat 553 611 IPR001611 GO:0005515
Pral5567g00004 1132 Pfam Leucine rich repeat 361 419 IPR001611 GO:0005515
Pral5567g00004 1132 SUPERFAMILY Protein kinase-like (PK-like) 761 1049 IPR011009 -
Pral5567g00004 1132 Gene3D Transferase(Phosphotransferase) domain 1 850 1066 - -
Pral5567g00004 1132 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 27 200 - -
Pral5567g00004 1132 ProSiteProfiles Protein kinase domain profile. 774 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5567g00004 1132 MobiDBLite consensus disorder prediction 1103 1132 - -
Pral5567g00004 1132 SUPERFAMILY L domain-like 27 300 - -
Pral5567g00004 1132 SMART LRR_sd22_2 117 149 - -
Pral5567g00004 1132 SMART LRR_sd22_2 526 544 - -
Pral5567g00004 1132 SMART LRR_sd22_2 478 501 - -
Pral5567g00004 1132 SMART LRR_sd22_2 382 411 - -
Pral5567g00004 1132 SMART LRR_sd22_2 623 648 - -
Pral5567g00004 1132 SMART LRR_sd22_2 165 191 - -
Pral5567g00004 1132 Pfam Protein kinase domain 776 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5567g00004 1132 Gene3D Ribonuclease Inhibitor 428 697 IPR032675 -
Pral5567g00004 1132 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 425 519 - -
Pral5567g00004 1132 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Pral5567g00004 1132 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 850 1066 - -
Pral5567g00004 1132 Gene3D Ribonuclease Inhibitor 29 140 IPR032675 -
Pral5567g00004 1132 FunFam Putative LRR receptor-like serine/threonine-protein kinase At4g26540 family 520 603 - -
Pral5567g00004 1132 Gene3D Ribonuclease Inhibitor 326 427 IPR032675 -
Pral5567g00004 1132 Gene3D Ribonuclease Inhibitor 217 325 IPR032675 -
Pral5567g00004 1132 ProSitePatterns Serine/Threonine protein kinases active-site signature. 894 906 IPR008271 GO:0004672|GO:0006468
Pral5567g00004 1132 Gene3D Ribonuclease Inhibitor 141 216 IPR032675 -
Pral5567g00004 1132 SMART LRR_typ_2 478 501 IPR003591 -
Pral5567g00004 1132 SMART LRR_typ_2 646 679 IPR003591 -
Pral5567g00004 1132 SMART LRR_typ_2 165 189 IPR003591 -
Pral5567g00004 1132 SMART LRR_typ_2 286 310 IPR003591 -
Pral5567g00004 1132 SMART LRR_typ_2 117 141 IPR003591 -
Pral5567g00004 1132 SMART LRR_typ_2 334 358 IPR003591 -
Pral5567g00004 1132 SMART LRR_typ_2 382 406 IPR003591 -
Pral5567g00004 1132 SMART LRR_typ_2 550 574 IPR003591 -
Pral5567g00004 1132 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 432 1050 - -
Pral5567g00004 1132 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 201 424 - -
Pral5567g00004 1132 FunFam Putative LRR receptor-like serine/threonine-protein kinase 604 689 - -
Pral5567g00004 1132 Gene3D Phosphorylase Kinase; domain 1 766 849 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5567g00004 Pral-Chr5567 34924 40242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5567g00004 24 1056 Receptor kinase-like Gene Family AT5G56040 54.851 0.0 1081
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pral5567g00004 Pkinase 1.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5567g00004 - - gmx:100778064 1560.81