Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5566g00001 ATGGATGGGACTTATTCCATCGGAATATGGGGGGTTCCAGAACTTGATATGGTTCATGATGTTAAGATGGGAGCTAGTCAAATGAAGGAGGCACTGTCCAATAAAAGTGTACTGGTAGTGTTTGATGATGTGAATCATATAGACCAACTCATAGCATTATGTGGGAGTAGGGATCTGTGCTTTGGCAAAAGGAGTTTAGTACTTGTTACGTCAACAAGTAAGGATCTAATTCTTGGCCTCGGACTCTACTTTTATGAAATGAAGGCGCTGGATGAGAGTGAGTCTCTTGAGCTTTTCAGCTGGCATGCATTTAAGAAATCTAGTCCAACAGATGATTTCATGTCTCTGTCAGGGAAAGCAATAAATTTTTGTGAAGGACTACCATTAGCTCTTGAAGTTATTGGCTCTCTTTTGCTTAATAGGACAAAAAAAGAGTGGAATAATGTGTTGAAGAAATTGAGAGGAATTCCTCGTGGTCAAATAAAAGAGAAGCTCAAGATAAGCTTGAATTTTTTAACCGATTCAGAGAAAGATTTATTCTATAATATAGCTTCCTTTTATGTGGGTCTAAATAAACATGATGTTACACAATTGTTAAAGGGCTCAAAATCTCCTGTAGAAAAGGCAATGCATGAGATTATAGAGCGGGGACTTGTAAAAGTTGATATGAGTGATAAGCTTGATGTTCATCATTTGTTGCGAGAGATAGGAAGAGAAATCAGTCCTAAAAAGATAAAGCATGAATATATCTATGATGTATTCTTGAGTTTTAGAGGTGAAGATACACGTAAATCTTTTACTACTCATCTTTGCACTGCTTTAAAGAAAGCAGGTATTGAGGTCTTCATGGATGAAGAGGGGATTGGAAGGGGTGAAGCCATTTCTTCCTCTTTACTGCAAGCAATTGAAAGTTCAAGAATGTCGATAATTATATTCTCAAAAAATTATGCTGGTTCTAGTTGGTGTTTACAAGAATTAGAGAAAATCATGGAGTGTCACAAAACAACTCATCAAGAGGTCTTACCAATATTTTATGATGTGCAACCATCTGAAGTTCGTAAACTACAAAATATTTTTGGAGAAGCATGGAAAAGACTCACACTAAGAAACTCAACTAGCAAAGTGAAGAAATCGATGATCAATTGGAAGAGAGCACTCATTGAAGCTGCGAATATATCTGGGTGGGACATGCATGAATGTAGAACTGAAACGGAGTTGATTGACGATGTGGTTGAAACTATAACAATGAAGCTAGACAGCAAAGACTTGTTTGTTGCTCACCATCCAGTGGGAGTGGAGCCTCGTGTGCAAGATATCATCAAGTTGCTGATTAATAAATCAAATGAGGTTATCATAGCAGGGATATGGGGGATGGGCGGGATTGGCAAGACTACTATTGCTAAAGCGATCTTCAATGAAATTGGTCAAACATTTGAAGGAAAGTGTTTCCTCTCAAATGTGAGGGAAGTGTGGAAGCAAGATAATGGTCAAGTTTATCTTCAAAAACAAATTCTTTCAAGCATCTTTAATGCAAGAAGAGTGAAGCTCACAAGTATAGAAATGGGGACAACTCTAATCAAGCAAATGCTTTGTAAGAAAAGAGTACTTATTGTTCTTGATGATGTAAATAATGATGATCAGTTGAAAGCTTTATGTGGAAATCATGAATGGTTTGGTAGAGGTAGTAGAATACTCATCACTACTAGAGATGAACGGCTACTCAAGATCCTTGGAGTGGAAGATCATAAGATATACAACATGAAAGAAATGAATGATAGTGAATCTCTTGAGCTTTTTAGTTGGCATGCGTTTAAGCAACGATTCCCTGAAAGAGATTATGTTGAATTTTCAAGGAGGATAGTTTCTTACTCAGGAGGTTTACCGCTAGCTCTTGAAGTTCTTGGCTCCTATTTATTTGATAGGGAAGCATTGATATGGGAAAGTGTTCTACAAAAACTACAAAAAATTCCAAATGATAAAATACATGAAAAGCTAAAAATAAGTTATGATGGTTTGAGTGACCAAACAGAGAGAGATATATTCCTTGATATATGTTGTTTTTTTATTGGGAAGGACAAAAGCTATGCTACACAAATATTAAATGGTTGTGGACTTCATGCTGATATTGGAATTATTCGTCTGGTAGAGAGGAGCCTCATAAAAGTTGGCAAGAAAAATAAGCTTGATATGCATGACTTACTACGTGATATGGGAAGACACATCATTCGTGAGCAATCACCAGAGGATCCTGAGAAGCAGAGCAGATTATGGTCTCATGATGATGTGCTAGATGTGCTAAGAAATTGCACGGGAACAATAGCGATTAAGGGATTGGCTTTGAACATGTCAACAAACAATTTAGGACCATTGAGTGCCAAAGCATTTGAGAACATGAAGAAGCTTCGTTTGCTCCAACTTGATCATGTACAACTTACTGGAGACTTTGGTTATCTATCAAAGGACTTAAGATGGCTGTGCTGGAATGGATTTCCCTTAGAAAACTTGCCAGCAAATTTAAGTCTCGAAAAGATAGTTGCCATAGACTTAAAGTGGAGTAATCTCACAAAAGTATGGGAGAAAAGTCAGAGGCTAGAGTGGTTGAAAATTCTCAATTTGAGTCATTGTCATCATTTGACAAAGACACCTGATTTTTCAAAGTTACCATATCTTGAAAAGCTAATACTCAAAGATTGTCCGCTTGTGTTTTCGATTCACCCCTCCATTGGAGATCTTAAATACATTGTTCTGTTAAATTTAAAGGACTGCAAAGACCTTAATCATCTCCCAAGAGGTATATATAACTTAAAATCTTTGAAAACTCTCAATCTTTCTGGTTGTTCAAAGATTGAAAAGTTGAAAGAAGACATTGGGCAAATGGAATCCTTGACAACTTTGGTGGCAAATCAAACTTCTATTACACAAGTTCCCTCCTCATTAGTGAGAATGAAAAGTATTAAATTTGTGTCACTATGTGGCTTCGAAGGATTATCGCGCGATGTATTTCCATCGATTGTTATGTCTTGGATGTCACCGACAGTTCATTCGAAGTCCCTGCTACGAGCATTTACGATTATGCCATCTTTAATCAAGGGTCTATCACATCCTTTATTTGCCAGAAGCCGTAAAGTATTAGAAGCAAGACCCAGCACATCTCAAGATTCATGTAGAACTCAAGGGTTAATTGGTTTTCAAGAGAAATCTCACATGGAAAGGTTAGAGCCATTGAGTTCTTTAACTATTCATTTAGGCGGCTTCAACAAAGTTATGGATGCACTTTTAAACAGTATTTCACAGGGATGGAGTGACGGAGGGTTTGACTATTCTCAGCTTCCTCAAGATAATTATCCTGATTGGCTATGTTTTGAGAGTGAAGGATCTTCTGCATCATTTAAAACGCCTCGAGTTTTGGGTTGTTTGATGGGAATGGTAATCTATATTATCTATTCATCTTCTCAAGATAGCATGGCATCCGTATATCCTGTTGGCTTCATGATAAAGAATTTCACAAAGGGTACTATGGACTTTTACAAGAGAGATGATGCAGCGACTTCTGCTGATGATGACTGGCACAAAATAATACTTAATCTAGAGCCTGATAATGAGGTCGAAATTACAGTCAATTTTGCCCAGAAGCATATTGTAAAGAAGACTTTAATCTATCTGGTATGA 3669 0.3712 MDGTYSIGIWGVPELDMVHDVKMGASQMKEALSNKSVLVVFDDVNHIDQLIALCGSRDLCFGKRSLVLVTSTSKDLILGLGLYFYEMKALDESESLELFSWHAFKKSSPTDDFMSLSGKAINFCEGLPLALEVIGSLLLNRTKKEWNNVLKKLRGIPRGQIKEKLKISLNFLTDSEKDLFYNIASFYVGLNKHDVTQLLKGSKSPVEKAMHEIIERGLVKVDMSDKLDVHHLLREIGREISPKKIKHEYIYDVFLSFRGEDTRKSFTTHLCTALKKAGIEVFMDEEGIGRGEAISSSLLQAIESSRMSIIIFSKNYAGSSWCLQELEKIMECHKTTHQEVLPIFYDVQPSEVRKLQNIFGEAWKRLTLRNSTSKVKKSMINWKRALIEAANISGWDMHECRTETELIDDVVETITMKLDSKDLFVAHHPVGVEPRVQDIIKLLINKSNEVIIAGIWGMGGIGKTTIAKAIFNEIGQTFEGKCFLSNVREVWKQDNGQVYLQKQILSSIFNARRVKLTSIEMGTTLIKQMLCKKRVLIVLDDVNNDDQLKALCGNHEWFGRGSRILITTRDERLLKILGVEDHKIYNMKEMNDSESLELFSWHAFKQRFPERDYVEFSRRIVSYSGGLPLALEVLGSYLFDREALIWESVLQKLQKIPNDKIHEKLKISYDGLSDQTERDIFLDICCFFIGKDKSYATQILNGCGLHADIGIIRLVERSLIKVGKKNKLDMHDLLRDMGRHIIREQSPEDPEKQSRLWSHDDVLDVLRNCTGTIAIKGLALNMSTNNLGPLSAKAFENMKKLRLLQLDHVQLTGDFGYLSKDLRWLCWNGFPLENLPANLSLEKIVAIDLKWSNLTKVWEKSQRLEWLKILNLSHCHHLTKTPDFSKLPYLEKLILKDCPLVFSIHPSIGDLKYIVLLNLKDCKDLNHLPRGIYNLKSLKTLNLSGCSKIEKLKEDIGQMESLTTLVANQTSITQVPSSLVRMKSIKFVSLCGFEGLSRDVFPSIVMSWMSPTVHSKSLLRAFTIMPSLIKGLSHPLFARSRKVLEARPSTSQDSCRTQGLIGFQEKSHMERLEPLSSLTIHLGGFNKVMDALLNSISQGWSDGGFDYSQLPQDNYPDWLCFESEGSSASFKTPRVLGCLMGMVIYIIYSSSQDSMASVYPVGFMIKNFTKGTMDFYKRDDAATSADDDWHKIILNLEPDNEVEITVNFAQKHIVKKTLIYLV 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5566g00001 1222 Gene3D - 11 80 IPR027417 -
Pral5566g00001 1222 Gene3D - 589 673 IPR042197 -
Pral5566g00001 1222 Gene3D - 89 172 IPR042197 -
Pral5566g00001 1222 SUPERFAMILY L domain-like 744 1009 - -
Pral5566g00001 1222 Gene3D - 248 416 IPR035897 -
Pral5566g00001 1222 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 251 996 IPR044974 GO:0006952
Pral5566g00001 1222 Pfam TIR domain 251 419 IPR000157 GO:0007165
Pral5566g00001 1222 ProSiteProfiles TIR domain profile. 249 418 IPR000157 GO:0007165
Pral5566g00001 1222 Gene3D - 417 583 IPR027417 -
Pral5566g00001 1222 Pfam NB-ARC domain 435 659 IPR002182 GO:0043531
Pral5566g00001 1222 Pfam NB-ARC domain 24 166 IPR002182 GO:0043531
Pral5566g00001 1222 PRINTS Disease resistance protein signature 452 467 - -
Pral5566g00001 1222 PRINTS Disease resistance protein signature 529 543 - -
Pral5566g00001 1222 PRINTS Disease resistance protein signature 933 949 - -
Pral5566g00001 1222 PRINTS Disease resistance protein signature 624 638 - -
Pral5566g00001 1222 SMART till_3 250 392 IPR000157 GO:0007165
Pral5566g00001 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 684 IPR027417 -
Pral5566g00001 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 182 IPR027417 -
Pral5566g00001 1222 SUPERFAMILY Toll/Interleukin receptor TIR domain 242 395 IPR035897 -
Pral5566g00001 1222 FunFam Disease resistance protein (TIR-NBS-LRR class) 247 420 - -
Pral5566g00001 1222 Gene3D Ribonuclease Inhibitor 764 1010 IPR032675 -
Pral5566g00001 1222 SUPERFAMILY "Winged helix" DNA-binding domain 659 766 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5566g00001 Pral-Chr5566 8097 13451 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5566g00001 225 979 WRKY Transcription Factor Family AT4G12020 31.620 2.00e-84 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5566g00001 - - pcin:129288830 1691.4