Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5565g00004 ATGTCTTCCTTGGCTTCTTCATTCTCCCAACCCAAATTGACTTCCAACTACGACGTCTTCGCAATTTCCCAAGTGACCCGACATCGCCTTCCAGACTTTCGGAATCTGGTAGGATCTCTAAGAGATGATACCATCAAACTTTTTGCAGACTGTATATACTCTTCAACGATGGTTGCGTCTCTTTCTTCCGCACTGGAGGCCATGGAAAGGTCGAGAATTCTTATGGTTATTTTCACGCCAGAATTCCTCAGCGTCTCCGACAAATTATTTCTCGAGAGGCTGCAGAACGTCATGGAGTGTCACAGATCTATGAATAGACCGGTGGTTCCTGTATTCTGGGGAGTCAAACAAAAGGAAGTGGTTGAGCATTTGGCGACACGATTCAGGGATTTGGACTGGATCGGAATCGCCGTTGAAGCTGCTTCGCAATCCGGCGTCACACTGTCCACTCATTTCAGGGAAGATATGAGTACACTTAAGGGGGCATTATATAGATACTTGTTTTGCAATCTTCCGCCCCATCCAGCGGGGTTACTACTCCGTAGTGTGAAAGATGTACTTCGTCTGTTGATGGATGGGACTTATTCCATCGGAATATGGGGGGTTCCAGGTATTGGTAAAACTACTTTTGCCAGAGCTATTTACGATAGAATTTGTGGCAGGTTTGAGAGAAAAAGTTTCCTTGCAAATATCAATGATGAATGGAAAAAAGATAACGGTCTAGTTCATCTACGACAGCAACTTATTTCAGATGTTTTCGATACAGAACTTGATATGGTTCATGATGTTAAGATGGGAGCTAGTCAAATGAAGGAGGCACTGTCCAATAAAAGTGTACTGGTAGTGTTTGATGATGTGAATCATATAGACCAACTCATAGCATTATGTGGGAGTAGGGATCTGTGCTTTGGCAAAAGGAGTTTAGTACTTGTTACGTCAACAAGTAAGGATCTAATTCTTGGCCTCGGACTCTACTTTTATGAAATGAAGGCGCTGGATGAGAGACAAAAAAAGAGTGGAATAATGTGTTGA 1032 0.4302 MSSLASSFSQPKLTSNYDVFAISQVTRHRLPDFRNLVGSLRDDTIKLFADCIYSSTMVASLSSALEAMERSRILMVIFTPEFLSVSDKLFLERLQNVMECHRSMNRPVVPVFWGVKQKEVVEHLATRFRDLDWIGIAVEAASQSGVTLSTHFREDMSTLKGALYRYLFCNLPPHPAGLLLRSVKDVLRLLMDGTYSIGIWGVPGIGKTTFARAIYDRICGRFERKSFLANINDEWKKDNGLVHLRQQLISDVFDTELDMVHDVKMGASQMKEALSNKSVLVVFDDVNHIDQLIALCGSRDLCFGKRSLVLVTSTSKDLILGLGLYFYEMKALDERQKKSGIMC 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5565g00004 343 Gene3D - 170 322 IPR027417 -
Pral5565g00004 343 PRINTS Disease resistance protein signature 196 211 - -
Pral5565g00004 343 PRINTS Disease resistance protein signature 273 287 - -
Pral5565g00004 343 Pfam TIR domain 17 122 IPR000157 GO:0007165
Pral5565g00004 343 SUPERFAMILY Toll/Interleukin receptor TIR domain 61 123 IPR035897 -
Pral5565g00004 343 Pfam NB-ARC domain 188 317 IPR002182 GO:0043531
Pral5565g00004 343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 336 IPR027417 -
Pral5565g00004 343 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 43 319 IPR044974 GO:0006952
Pral5565g00004 343 Gene3D - 12 161 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5565g00004 Pral-Chr5565 88702 96413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5565g00004 63 333 WRKY Transcription Factor Family AT4G12020 24.028 4.90e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5565g00004 - - pcin:129288026 359.377