Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5558g00018 ATGGAAGCAATTTGTTGGAGTTCTGGTGTTCGGGGAAATGCCTCAGAGGCAAGTCCTGATGGTTTTCTGGATAACTATGCGGAAATAGGTGGAGGGTTTGCTTCATCTTCATCTCTGGTGTTGGACAGGGACAAGGGAGAGCTTGTGGCTGCTCCGGCCAAACTGGAGCGCAAGAGTGGGTCCAATGAGAGAAGTGTTGAAAGTTTGAAGAACCATAGCGAAGCAGAGAGGAGGAGGAGGGCAAGGATTAATGCACATCTTGACACGCTTAGGAGTGTAGTTCCGGGTGCTAAGAAGATGGACAAAGCGTCATTACTTGGCGAGGTTATCAGACATTTGAAAGAGCTGAAAAGGAATGCAGCACAAGCATGTGAGGGTTTGATGATACCAAAGGACAGCGATGAAATAAGAGTTGAAGAACAGGAGGATGGTTCAAATGGCTTCCCTTATTCAATCAAAGCATCGCTATGTTGTGAATATAAACCAGGGTTGTTGCCTGAACTAAGACAAGCACTTGATGCCCTTCATCTTAAGATAATGATGGCAGAAATTGCAACCTTGGGAGGGAGGATGAAGAATGTGTTTGTTATAATTAGCTGTAGAGAGCACAACATTGAAGATACTGCATATCGTCAGTTTCTTGCAGTCTCTGTTCATCAAGCTATTAGGTCTGTACTTGATAGATTCTCTTCTTCAGAAGATCTCTTTAGAACCAGAAAGAGAAGGAGACTTTCTATATTCAGTTCATCACCTTTGGGAGATTTCTTGTGA 771 0.4371 MEAICWSSGVRGNASEASPDGFLDNYAEIGGGFASSSSLVLDRDKGELVAAPAKLERKSGSNERSVESLKNHSEAERRRRARINAHLDTLRSVVPGAKKMDKASLLGEVIRHLKELKRNAAQACEGLMIPKDSDEIRVEEQEDGSNGFPYSIKASLCCEYKPGLLPELRQALDALHLKIMMAEIATLGGRMKNVFVIISCREHNIEDTAYRQFLAVSVHQAIRSVLDRFSSSEDLFRTRKRRRLSIFSSSPLGDFL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5558g00018 256 SMART finulus 73 122 IPR011598 GO:0046983
Pral5558g00018 256 Pfam Helix-loop-helix DNA-binding domain 71 116 IPR011598 GO:0046983
Pral5558g00018 256 Gene3D - 62 124 IPR036638 GO:0046983
Pral5558g00018 256 PANTHER TRANSCRIPTION FACTOR BHLH30 34 246 IPR045847 GO:0003700|GO:0006355
Pral5558g00018 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 120 IPR036638 GO:0046983
Pral5558g00018 256 MobiDBLite consensus disorder prediction 55 78 - -
Pral5558g00018 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 116 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5558g00018 Pral-Chr5558 55383 58012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5558g00018 48 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 48.366 1.35e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5558g00018 HLH 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5558g00018 - - gmx:100783322 364.77