Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5555g00010 ATGGTAGCTTTTCGTTTATTCATATCTCTCGTACTTGTCTCCATCTTATTCTCTTCTTCTGCTACAAGTTATTCTGTAGACGAAATCAAATTGTGGTGCAACCAAACCCCAAATCCTCAACCATGTGAGTATTTCTTGAGCAACAATCCCATTCACAGCCAAAAGAACATCAAACACAAAGATGATTTTCTCAAGCTTTCTCTTCAAGTAGCCCAAGAACGAGCCCTGAAAGGCCATGCAAATACTCTTTCTCTAGGATCTAAGTGTCGTAATCCTAATGAAAAAGCTGCATGGGCTGATTGCATTGAGCTTTATGAGCACACCATCCAAAGACTCAACAAAACCCTAGACCCCAACACCAAATGCTCCCAAGATGATGCTCAAACATGGCTCAGCACGGCTCTCACCAACCTCGAGACGTGCCGAGCTGGCTTCTACGAGCTCGGAGTTCAAGACTATGTGTTGCCTTTGATGTCCAACAATGTCACTAAGCTGTTGAGCAACACTTTGGCTCTGAACAAAGCTGATTACAAAGAGCCAAGTTATAAAGAAGGGTTCCCAACATGGGTTAAGCCTGGAGATAGGAAGTTGTTGCAGTCTTCTTCTTCATCTTCTCGAGCCAACGTTGTTGTGGCCAAAGATGGATCTGGCAAATACACAAGTATAAATGCTGCTATAAATGCAGCACCAAAGAGCAGTAGTGGGAGATATGTGATATATGTGAAGGCTGGAATCTACAACGAACAGGTAGAGATAAAGGCAAAGAATATAATGTTGGTGGGAGATGGCATTGGGAAGACTATAATCACAGGAAGCAAAAGTGTTGGAGGAGGCACCACAACCTTCCGGTCAGCCACTGTTGCTGTTGTTGGGGATGGATTTATTGCTCAAGGAATCACATTTAGAAACACTGCTGGAGCTTCAAATCACCAAGCTGTTGCCCTGCGTTCAGGTTCAGATCTATCAGTTTTCTACAAATGCAGCTTTGAAGGATACCAAGACACATTATATGTGCACTCTGAGAGACAATTCTACAGAGAATGTAACATCTATGGCACTGTGGATTTCATCTTTGGAAACGCAGCCGTAGTTTTCCAGAACTGCAACATTTTCGCTAGAAACCCTCCAAACAAAGTAAACACAATCACAGCACAGGGCCGAACTGATCCGAACCAAAACACTGGAATTTCCATTCATAACTGTAGAATTACGGCTGCTTCAGAGCTAAAAGCAGTCCAGAGCTCTGTGAGGACCTATCTTGGAAGGCCATGGAAGCAATATTCTCGAACAGTGATTATGAAGAGCTTTCTTGATAGTTTGATAAACCAGGCTGGTTGGCTGGAATGGAGTGGTAACTTTGCGTTGAACACTTTATATTATGGGGAGTATATGAACACTGGTTCAGGTTCTTCCACTGCAAATCGAGTTAAGTGGTCAGGTTTCCACGTAATTACCAGTGCTTCAGAAGCTTCAAAATTCACCGTTGGGAATTTCATAGCCGGCAATTCATGGTTGCCAGCCACCAGTGTTCCTTTTACGTCTGGCTTATAA 1551 0.4326 MVAFRLFISLVLVSILFSSSATSYSVDEIKLWCNQTPNPQPCEYFLSNNPIHSQKNIKHKDDFLKLSLQVAQERALKGHANTLSLGSKCRNPNEKAAWADCIELYEHTIQRLNKTLDPNTKCSQDDAQTWLSTALTNLETCRAGFYELGVQDYVLPLMSNNVTKLLSNTLALNKADYKEPSYKEGFPTWVKPGDRKLLQSSSSSSRANVVVAKDGSGKYTSINAAINAAPKSSSGRYVIYVKAGIYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQGITFRNTAGASNHQAVALRSGSDLSVFYKCSFEGYQDTLYVHSERQFYRECNIYGTVDFIFGNAAVVFQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHNCRITAASELKAVQSSVRTYLGRPWKQYSRTVIMKSFLDSLINQAGWLEWSGNFALNTLYYGEYMNTGSGSSTANRVKWSGFHVITSASEASKFTVGNFIAGNSWLPATSVPFTSGL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5555g00010 516 Pfam Plant invertase/pectin methylesterase inhibitor 28 172 IPR006501 GO:0004857
Pral5555g00010 516 FunFam Pectinesterase 202 516 - -
Pral5555g00010 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 175 IPR035513 -
Pral5555g00010 516 SMART PMEI_2 24 172 IPR006501 GO:0004857
Pral5555g00010 516 SUPERFAMILY Pectin lyase-like 203 515 IPR011050 -
Pral5555g00010 516 Pfam Pectinesterase 208 502 IPR000070 GO:0030599|GO:0042545
Pral5555g00010 516 ProSitePatterns Pectinesterase signature 1. 233 252 IPR018040 -
Pral5555g00010 516 Gene3D - 202 516 IPR012334 -
Pral5555g00010 516 PANTHER PECTINESTERASE 11 508 - -
Pral5555g00010 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 174 IPR035513 -
Pral5555g00010 516 CDD PMEI-like_3 31 175 - -
Pral5555g00010 516 FunFam Pectinesterase 24 175 - -
Pral5555g00010 516 NCBIfam pectinesterase inhibitor domain 7 174 IPR006501 GO:0004857
Pral5555g00010 516 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5555g00010 Pral-Chr5555 240686 243024 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5555g00010 1 516 Carbohydrate Esterase AT2G45220 67.375 0.0 730