Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5555g00007 ATGCGAGCCGCCAAGTCTAAGCCCTTCAGTTCTTCTGTTTCTGGGTATTCATGGAATGAGGTTAAGGTTTGGTGCAAGCAAACCCCAAATCCTCAACCGTGTGAGTACTTCATGAACAACAATCCCATTCACAGCCAAAAGATCATCAAACACAAAGATGATTTTCTCAAGCTTTCTCTTCAAGTAGCCCAGGAGAGAGCCCTGAAAGGCCATGCAAACACTGTTTCATTAGGACCAAAATGTAGGAACTCACGTGAGAAAGCTGCATGGGCTGATTGCATAGAGCTTTACGAGCAAGCCGTCGAGAAACTCAACAAAACCCTAAACCCCAACACCAAGTTCTCCCAAGTAGATGCTCAAACATGGCTCAGCACGGCTCTCACCAACCTCGAGACGTGCCGAGCAGGCTTCTACGAGCTCGGAGTTCAAGACTTTGTGTTGCCTTTGATGTCCAACAATGTCACTAAGTTGGTGAGCAACACTTTGGCTCTGAACAAAGTTGAATACAAAGAGCCAAGTCATAAAGAAGGGTTTCCAACGTGGGTTAAGCCTGGAGATAGGAAGTTGTTGCAGTCTTCTTCATCTTCTTCTCGGGCCAATGTTGTTGTGGCCAAAGATGGATCTGGCAAATACACAACTATAAGTGCTGCTATAAATGCAGCACCAAAGAGTAGTAGTGGGAGATATGTGATATATGTGAAGGCCGGAACCTACAACGAACAGGTAGAGATAAAGGCAAAGAATATAATGTTGGTGGGAGACGGCATTGGGAAGACTATAATCACAGGAAGTAAAAGTGTTGGAGGAGGCACCACTACCTTCCGGTCAGCCACTGGTTATTATGGCTGCTTCAGAGTTAAAAGCAGCTCAGAGCTCTGTGAAAACCTATATTGGAAGGCCATGGAAGCAATATTCTCGAACAGTGATTATGAGAGCTTTCTTGATAGTTTGATAAACCAGGCTGGTTGGTTTGAATGGAGTGGTAACTTTGCGTTGCACTTAAGAATGGAATTTTTGCAGCCGTAG 1026 0.4493 MRAAKSKPFSSSVSGYSWNEVKVWCKQTPNPQPCEYFMNNNPIHSQKIIKHKDDFLKLSLQVAQERALKGHANTVSLGPKCRNSREKAAWADCIELYEQAVEKLNKTLNPNTKFSQVDAQTWLSTALTNLETCRAGFYELGVQDFVLPLMSNNVTKLVSNTLALNKVEYKEPSHKEGFPTWVKPGDRKLLQSSSSSSRANVVVAKDGSGKYTTISAAINAAPKSSSGRYVIYVKAGTYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATGYYGCFRVKSSSELCENLYWKAMEAIFSNSDYESFLDSLINQAGWFEWSGNFALHLRMEFLQP 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5555g00007 341 CDD PMEI-like_3 24 166 - -
Pral5555g00007 341 Gene3D - 194 309 IPR012334 -
Pral5555g00007 341 SMART PMEI_2 16 164 IPR006501 GO:0004857
Pral5555g00007 341 Gene3D Invertase/pectin methylesterase inhibitor family protein 17 167 IPR035513 -
Pral5555g00007 341 FunFam Pectinesterase 16 167 - -
Pral5555g00007 341 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 20 167 IPR035513 -
Pral5555g00007 341 SUPERFAMILY Pectin lyase-like 195 332 IPR011050 -
Pral5555g00007 341 Pfam Pectinesterase 200 278 IPR000070 GO:0030599|GO:0042545
Pral5555g00007 341 Pfam Plant invertase/pectin methylesterase inhibitor 21 164 IPR006501 GO:0004857
Pral5555g00007 341 ProSitePatterns Pectinesterase signature 1. 225 244 IPR018040 -
Pral5555g00007 341 NCBIfam pectinesterase inhibitor domain 17 166 IPR006501 GO:0004857
Pral5555g00007 341 PANTHER PECTINESTERASE 20 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5555g00007 Pral-Chr5555 219040 221264 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5555g00007 10 317 Carbohydrate Esterase AT2G45220 56.250 7.83e-119 351