Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5555g00006 ATGGCAGCTTTTCGCCTTTTCTCGCACAAGGCCTTTTTGTTATTTGTTCCCTTATTTCTACTTTGTAGTTCTTCTGTTTCTGGGTATTCATGGAATGAGGTTAAGGTTTGGTGCAAGCAAACCCCAAATCCTCAACCGTGTGAGTGCTTCATGAACAACAATCCCATTCACAGCCAAAAGATCATCAAACACAAAGATGATTTTCTCAAGCTTTCTCTTCAAGTAGCCCAGGAGAGAGCCCTGAAAGGCCATGCAAACACTGTTTCATTAGGACCAAAATGTAGGAACTCACGTGAGAAAGCTGCATGGGCTGATTGCATAGAGCTTTACGAGCAAGCCGTCGAGAAACTCAACAAAACCCTAAACCCCAACCCCAAGTTCTCCCAAGAAGACGCTCAAACATGGCTCAGCACGGCTCACACCAACCTCGAGACGTGCCGAGCAGGCTTCTACGAGCTCGGAGTTCAAGACTTTGTGTTGCCTTTGATGTCCAACAATGTCACTAAGTTGGTGAGCAACACTTTGGCTCTGAACAAAGTTGAATACAAAGAGCCAATTGAATACGAAGAGCCAACTTATAAAGAAGGGTTTCCAACATGGGTTATTAAGCCTGGAGATAGGAAGTTGTTGCAGTCTTCTTCTTCATCTTCACGGGGCAACGTTGTTGTGGCCAAAGATGGATCTGGCAAATACACAACTATTGGCGCTGCTATAAATGCAGCACCAAAGAGCAGTTGTGGGAGATATGTGATATATGTGAAGGCTGGAATCTACAACGAACAGGTAGAGATAAAGGCAAAGAATATAATGTTGGCGGGAGACGGCATAGGGAAGACTATAATCGCAGGAAGTAAAAGTGTTGGAGAAGGCACCACTGCCTTCCGGTCAGCCACTGTTGGCAAGTCGAAAGTCATCAAAGTTTAA 924 0.4491 MAAFRLFSHKAFLLFVPLFLLCSSSVSGYSWNEVKVWCKQTPNPQPCECFMNNNPIHSQKIIKHKDDFLKLSLQVAQERALKGHANTVSLGPKCRNSREKAAWADCIELYEQAVEKLNKTLNPNPKFSQEDAQTWLSTAHTNLETCRAGFYELGVQDFVLPLMSNNVTKLVSNTLALNKVEYKEPIEYEEPTYKEGFPTWVIKPGDRKLLQSSSSSSRGNVVVAKDGSGKYTTIGAAINAAPKSSCGRYVIYVKAGIYNEQVEIKAKNIMLAGDGIGKTIIAGSKSVGEGTTAFRSATVGKSKVIKV 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5555g00006 307 SUPERFAMILY Pectin lyase-like 215 299 IPR011050 -
Pral5555g00006 307 ProSitePatterns Pectinesterase signature 1. 245 264 IPR018040 -
Pral5555g00006 307 SMART PMEI_2 29 177 IPR006501 GO:0004857
Pral5555g00006 307 Gene3D - 214 304 IPR012334 -
Pral5555g00006 307 PANTHER PECTINESTERASE 19 301 - -
Pral5555g00006 307 Pfam Pectinesterase 220 301 IPR000070 GO:0030599|GO:0042545
Pral5555g00006 307 CDD PMEI-like_3 37 179 - -
Pral5555g00006 307 Pfam Plant invertase/pectin methylesterase inhibitor 34 177 IPR006501 GO:0004857
Pral5555g00006 307 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 180 IPR035513 -
Pral5555g00006 307 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 180 IPR035513 -
Pral5555g00006 307 NCBIfam pectinesterase inhibitor domain 11 179 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5555g00006 Pral-Chr5555 208962 210314 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5555g00006 1 299 Carbohydrate Esterase AT2G45220 58.528 2.29e-114 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5555g00006 K01051 - gmx:100793904 439.113