Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral5552g00007 | ATGAACGACCTCATGACCAAATCCTTCATGAGCTACGTGGATCTGAAGAAAGCCGCAATGAAAGACGAAGTGGATCTGGAAGCTGGTCTTCCTCCATCCGGCGTGGAACTTCGCTCCTCAACAAATCAATTGGATACCGACATGGGTCTCTTCCTGGAAGAGGCCGAGAAGGTGAAAACGGAGATGGCGGATCTCCGTGACATTCTGGGCAAACTTCAGCAAGCAAACGAAGAAAGTAAATCCCTGCACAATCCTGAGGCTCTAAAATCCTTAAGGATCAGAATCAACGCCGATATCGTCTCTGTGCTTAAGAAGGCCAGAACAATCCGGTCTCAACTGGAAGAAATGGACCGAGCTAATGCGGCCAATAGGAGGCTCTCTGGCCTCAAAGACGGCACGCCTGCCATTTACAGAACCAGGATTTCAGTCACCAATGGCCTTCGCAAGAAACTGAAGGAGCTAATGATGGAGTTTCAGGAGCTGAGGCAGAGGATGATGACTGAATACAAAGAGACAGTGGGAAGACGCTATTTTACTGTAACAGGGGAACACCCAGATGAAGAAGTGATTGAGAAGATCATATCCAATGGGGAAGAAGAGTTCCTAAGCAAAGCTATTCAAGAGCACGGGAGAGGGAAAGTTCTAGAGACGGTGGTGGAGATACAGGACAGGCACGATGCTGCTAAAGAGATCGAGAAGAGTCTACTGGAGCTGCACCAGGTGTTTCTGGACATGGCGGTGATGGTTGAAGCTCAGGGCGAGAAGATGGACGACATTGAGCACCATGTGCTTCATGCTTCCCACTATGTCAAGGATGGGACTAAAAATCTGCAGACTGCAAAGAAATACCAGAGGAGCAGCAGAAAGTGGATGTGCATTGGAATCATACTTCTCCTGATTCTGATCCTCGTAATCGTCATCCCTATTGCCACCAGTTTCAGCAGCTCTTGA | 951 | 0.4848 | MNDLMTKSFMSYVDLKKAAMKDEVDLEAGLPPSGVELRSSTNQLDTDMGLFLEEAEKVKTEMADLRDILGKLQQANEESKSLHNPEALKSLRIRINADIVSVLKKARTIRSQLEEMDRANAANRRLSGLKDGTPAIYRTRISVTNGLRKKLKELMMEFQELRQRMMTEYKETVGRRYFTVTGEHPDEEVIEKIISNGEEEFLSKAIQEHGRGKVLETVVEIQDRHDAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLQTAKKYQRSSRKWMCIGIILLLILILVIVIPIATSFSSS | 316 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral5552g00007 | 316 | Pfam | SNARE domain | 255 | 306 | IPR000727 | - | |
| Pral5552g00007 | 316 | Coils | Coil | 144 | 171 | - | - | |
| Pral5552g00007 | 316 | FunFam | Syntaxin 132 | 211 | 311 | - | - | |
| Pral5552g00007 | 316 | CDD | SynN | 48 | 205 | IPR006011 | GO:0016020 | |
| Pral5552g00007 | 316 | Pfam | Syntaxin | 51 | 253 | IPR006011 | GO:0016020 | |
| Pral5552g00007 | 316 | CDD | SNARE_syntaxin1-like | 217 | 279 | - | - | |
| Pral5552g00007 | 316 | Gene3D | - | 48 | 176 | - | - | |
| Pral5552g00007 | 316 | SMART | SynN_4 | 43 | 170 | IPR006011 | GO:0016020 | |
| Pral5552g00007 | 316 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 218 | 280 | IPR000727 | - | |
| Pral5552g00007 | 316 | ProSitePatterns | Syntaxin / epimorphin family signature. | 224 | 264 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Pral5552g00007 | 316 | PANTHER | SYNTAXIN | 59 | 302 | IPR045242 | - | |
| Pral5552g00007 | 316 | SUPERFAMILY | t-snare proteins | 46 | 273 | IPR010989 | GO:0016020|GO:0016192 | |
| Pral5552g00007 | 316 | Gene3D | - | 214 | 314 | - | - | |
| Pral5552g00007 | 316 | Coils | Coil | 55 | 78 | - | - | |
| Pral5552g00007 | 316 | SMART | tSNARE_6 | 213 | 280 | IPR000727 | - | |
| Pral5552g00007 | 316 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 45 | 176 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral5552g00007 | Pral-Chr5552 | 52764 | 54200 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral5552g00007 | 1 | 316 | SNARE and Associated Proteins | AT1G08560 | 67.398 | 1.19e-138 | 393 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral5552g00007 | K08486 | - | qsa:O6P43_006135 | 525.398 |