Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5552g00001 ATGGCCAGCCCACAGTCTAATTTACCTCCTGGTTTTAGGTTTCACCCTACTGATGAGGAGCTCATTCTCCACTATCTCAGGAAGAAGGTCGCCTCCATGCCCTTACCCGTCTCCATCATTGCCGAGGTTGATATCTACAAGTCTGATCCCTGGAACTTACCTGAGAAGGCAGCGTTTGGGGATAAAGAATGGTACTTTTTCAGTCCCCGTGACCGCAAGTACCCAAACGGGGCGAGGCCAAACAGGGCAGCTGGTTCAGGGTACTGGAAGGCGACGGGCACTGACAAGACGATAGTGGCATCGTTGCCTGGAGGAGGAGCGACGGAGATCGTGGGGGTGAAGAAGGCCCTAGTGTTCTACACTGGAAAACCCCCCAAGGGCGTCAAGACCAACTGGATCATGCATGAATATCGCCTCCTCGACAACACCAGAAACAGACCTGTCAAGTTCCATGACTGCTCCATGAGATTGGATGACTGGGTTCTTTGCCGAATTTACAAGAAGTCCAAATATGCAGAATCTCCCACTGCAGAAGCAGAAACGACCTTGGTGGCTGACCAAGATACCGCAGAAGAGCAGATATTGCCGAGCTCTCAATCTCCCTCTCCTCATCAAAACATTCTGATTCCTCAAAAATCAATGTCTTTCTCGAACTTGTTAGATGCCGCAGACTTCTCCATGTTGAGCAGCTTATTGTCTGACAACTATTCCACCCCACCTGGATTTGAATCAGGCGCAGCTGCTGCTAGTTCTAACTCTGAAACTATCAATCTGGATCAACAATCATCCCAAAACACTCACGCCAACAGCAGTTTCTTGCTTCAGAGGACCCCCCAATTAAATCCCTCCATCCAAAGCATGGAAAACAATATGCACAAGCGTCACATTTCAGGCCTGGATGAGGATATCTCATACCCATCAAAAAGGTATCTCAGCTCTGCTTCCTGCAGCTTCCCTACCAACAATACCAACCAATTCGAGAATCCACAGTGGAACTTCCTCCTCAAGCAGTCGTTGTTGAACCAGCAGTTACTTCCGGGGCCTCATCTTCGCTTTCAGGGATAA 1065 0.492 MASPQSNLPPGFRFHPTDEELILHYLRKKVASMPLPVSIIAEVDIYKSDPWNLPEKAAFGDKEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKTIVASLPGGGATEIVGVKKALVFYTGKPPKGVKTNWIMHEYRLLDNTRNRPVKFHDCSMRLDDWVLCRIYKKSKYAESPTAEAETTLVADQDTAEEQILPSSQSPSPHQNILIPQKSMSFSNLLDAADFSMLSSLLSDNYSTPPGFESGAAAASSNSETINLDQQSSQNTHANSSFLLQRTPQLNPSIQSMENNMHKRHISGLDEDISYPSKRYLSSASCSFPTNNTNQFENPQWNFLLKQSLLNQQLLPGPHLRFQG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5552g00001 354 Gene3D NAC domain 17 173 IPR036093 GO:0003677|GO:0006355
Pral5552g00001 354 MobiDBLite consensus disorder prediction 243 267 - -
Pral5552g00001 354 Pfam No apical meristem (NAM) protein 9 139 IPR003441 GO:0003677|GO:0006355
Pral5552g00001 354 SUPERFAMILY NAC domain 4 168 IPR036093 GO:0003677|GO:0006355
Pral5552g00001 354 ProSiteProfiles NAC domain profile. 8 168 IPR003441 GO:0003677|GO:0006355
Pral5552g00001 354 PANTHER NAC TRANSCRIPTION FACTOR 56 8 235 - -
Pral5552g00001 354 FunFam NAC transcription factor 56 17 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5552g00001 Pral-Chr5552 11839 13570 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5552g00001 4 354 NAC Transcription Factor Family AT3G04070 48.209 5.32e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral5552g00001 NAM 2.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5552g00001 - - gmx:100301906 468.388