Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5549g00005 ATGGAATCGGAGGATTCGGTGAAACTGCAATTGGAGGAATTGCAGAAACATTTGGGGAAGAAGCAAAAGTTCGAGGACGCTGTGTTCTCTCTCAAATCCCTCCTTCAACAAAAATATCCATCCGCTTCTCCCTCTCTCCGCAATCTGTATTTTTATACGGCTATATGCCGAGTTGCTACTGTATTGAAGACCAGGTATACCGCACCGGGTTTCTGGAATGCTGGGCTGGGGCTTTTTGAGCAGGCTGAATTGCTTGTTTCTGATCCATCTGAGAAGGAACACTTGAAGGGTTGCATTTCTCAGGCGAGGGGAGAGTTGCATCTAGAGGATAATCCGACACAAGCTTCACAACCAGCTCAAAATCCTGTGAATGGAGGGTATCTTTTTGAGGGACACCTTACTGTGGATCCAGAGCCTCCTCAGCCTCAATGGCTTGTGCAGTCAAACCTCTTGACAACAGCTGGTACACTTTTTTCTGCTGAATCATCTCAAGGTTTAGCGGCAGATGATCCTTCACGGGAAAATGCTGCAAATATGCTTCAGGATCTTCTGAATAGATTAGAAGATGCCGTGCCACTGATGCTGAGTGATGGTCCAGCGCCTCCAAAAGTCCCTCCTGCTAGCAAAGAAGTTGTGGCAAAACTTCCGGTCATTACTCTTACAGGGGAAATCCTGGCTAAGTTGGGGAAAGATGCCGAGTGTGCAATTTGCAAGGAAAACTTGGCTTTAAATGACAAAATGCAGGAGTTGCCATGCAAGCACACTTTCCACCCACCTTGTCTGAAGCCATGGCTGGACGAGCATAATTCATGCCCTATTTGTCGGTATGAGCTGCAAACTGATGACCATGCCTATGAGAGCTGGAAAGAACGCGAGAAGGAAGCAGAAGAAGAGAGAAAGGGTGCTGAAAATGCCGTTCGTGGTGGCGAATATATGTATGTTTAG 945 0.4698 MESEDSVKLQLEELQKHLGKKQKFEDAVFSLKSLLQQKYPSASPSLRNLYFYTAICRVATVLKTRYTAPGFWNAGLGLFEQAELLVSDPSEKEHLKGCISQARGELHLEDNPTQASQPAQNPVNGGYLFEGHLTVDPEPPQPQWLVQSNLLTTAGTLFSAESSQGLAADDPSRENAANMLQDLLNRLEDAVPLMLSDGPAPPKVPPASKEVVAKLPVITLTGEILAKLGKDAECAICKENLALNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEAEEERKGAENAVRGGEYMYV 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5549g00005 314 SMART ring_2 234 274 IPR001841 -
Pral5549g00005 314 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Pral5549g00005 314 CDD RING-H2_RNF126-like 233 275 - -
Pral5549g00005 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 281 IPR013083 -
Pral5549g00005 314 MobiDBLite consensus disorder prediction 289 305 - -
Pral5549g00005 314 Coils Coil 285 305 - -
Pral5549g00005 314 MobiDBLite consensus disorder prediction 289 314 - -
Pral5549g00005 314 FunFam E3 ubiquitin-protein ligase RNF181 196 281 - -
Pral5549g00005 314 Pfam Ring finger domain 233 275 IPR001841 -
Pral5549g00005 314 SUPERFAMILY RING/U-box 228 281 - -
Pral5549g00005 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 114 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5549g00005 Pral-Chr5549 24563 27065 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5549g00005 7 314 C3H Transcription Factor Family AT5G20910 64.078 1.89e-129 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5549g00005 K16274 - qsa:O6P43_015814 506.523