Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5548g00051 ATGGTACAATCAAAGAAGTTCAGAGGAGTAAGGCAGCGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCATCCTCTGCTAAAGAGAAGGGTGTGGCTGGGGACATTTGAGACGGCAGAGGCAGCAGCGAGGGCATATGATCAAGCAGCCATTTTGATGAATGGTAGAAATGCAAAGACAAATTTCCCAGCTCCATTGAATGAAGCTGAAGATGGAGGAGGGTCTTTCTTGTCTCCCAAGGCTCTCTCAGAGCTGTTATCCACAAAGCTTAAGAAATGCTGCAAGGACCCATCTCCTTCCCTCACTTGTCTCAGGCTTGATTCTGATAATTCTCACATTGGTGTGTGGCAAAAGAGACCAGGACCTCGCTCGGATTCCAATTGGGTCGTCAGGGTAGAGCTTGGCAAGAAACAAGCACAGCAAGGTGATGATAAAACTGCTGCAGACGCCATTAGCAGTGAAGCTGCAAGCGAGTTGGAAGATGAAGAGGCAATGCAGATGATTGATGAGCTTCTTAATTGGAACTATCCGTGTGATTCCTCCAGTAGCCCTTAA 555 0.4811 MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGRNAKTNFPAPLNEAEDGGGSFLSPKALSELLSTKLKKCCKDPSPSLTCLRLDSDNSHIGVWQKRPGPRSDSNWVVRVELGKKQAQQGDDKTAADAISSEAASELEDEEAMQMIDELLNWNYPCDSSSSP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5548g00051 184 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Pral5548g00051 184 MobiDBLite consensus disorder prediction 136 162 - -
Pral5548g00051 184 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Pral5548g00051 184 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Pral5548g00051 184 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Pral5548g00051 184 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Pral5548g00051 184 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 147 - -
Pral5548g00051 184 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Pral5548g00051 184 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Pral5548g00051 184 CDD AP2 5 64 IPR001471 GO:0003700|GO:0006355
Pral5548g00051 184 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5548g00051 Pral-Chr5548 412454 413499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5548g00051 1 181 AP2-EREBP Transcription Factor Family AT5G25390 62.366 4.57e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral5548g00051 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5548g00051 - - lang:109326202 261.536