Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5548g00017 ATGGCCTCTAAAATGGAAATCGAGAATTCTACCGATGCTCCGTCATTGCCAAAGAATGTATACAAAGATCCAGATGATGGACGGCAGCGATTTTTGCTTGAGCTGGAATTTGTTCAATGCCTTGCTAATCCCACCTACATTCACTATTTGGCTCAGAATCGATATTTTGAAGATGAAGCATTCATTGGATACTTGAAGTACCTTCAATACTGGCAACGGCCTGAGTACCTCAAGTTTATTATGTATCCTCATTGCCTTTTCTTCCTAGAACTTCTTCAGAATGCAAATTTCCGAAATGCAATGGCGCATCCTGGAAATAAGGAACTTGCGCATAGACAACAATTTTATTTCTGGAAGAACTATCGGAACAATAGGTTGAAGCACATTTTACCAAGGTCACTTCCTGAATCTAGTGTCACAGCCGCACCTCATGCGGCTGCCTCAACTCCGTCTCAGCCACCAGTGCCTGCTTTGCCACCCGTGCCAGCTGCTAATGTTCCGGTGGCTGTATCATCTGCTCAGGCTCTTTCTCCAATGCCATATGGTGTGCCGCCTGGATCTGCCCTTGCAAAAAATGATATGAGGAATCCTGCACTTGATAGGAGGAAGAGAAAGTAA 618 0.445 MASKMEIENSTDAPSLPKNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYLKFIMYPHCLFFLELLQNANFRNAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRSLPESSVTAAPHAAASTPSQPPVPALPPVPAANVPVAVSSAQALSPMPYGVPPGSALAKNDMRNPALDRRKRK 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5548g00017 205 MobiDBLite consensus disorder prediction 140 159 - -
Pral5548g00017 205 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 5 205 IPR008831 GO:0003712|GO:0006355|GO:0016592
Pral5548g00017 205 MobiDBLite consensus disorder prediction 1 22 - -
Pral5548g00017 205 MobiDBLite consensus disorder prediction 181 205 - -
Pral5548g00017 205 FunFam Mediator of RNA polymerase II transcription subunit 31 17 118 - -
Pral5548g00017 205 MobiDBLite consensus disorder prediction 1 16 - -
Pral5548g00017 205 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 17 118 IPR038089 -
Pral5548g00017 205 Pfam SOH1 29 121 IPR008831 GO:0003712|GO:0006355|GO:0016592
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5548g00017 Pral-Chr5548 164554 166719 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Pral5548g00017 Med31 4.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5548g00017 K15153 - gmx:100527879 332.413