Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5548g00007 ATGGAGACGCTAAGAACACAGACTCTTCTCTGTTTCATGGCACTTGTCTGGCTTTCTTATTCTTCTTCTGCAAATGCTTTGCTCTCTCCTAAAGGAGTGAACTTTGAAGTTCAAGCTTTGATGGGCATAAAAGCTTCTTTGGTCGATCCTCATGGAGTTTTAGATACTTGGGATGGAGATGCTGTCGATCCTTGTAGCTGGACCATGGTCACCTGTTCTTCTGACAGCCTTGTCGTTAGCCTGGGCACTCCCAGTCAAAGCTTATCTGGTACTTTGTCTCCCACCATAGGAAACCTCACAAACCTTCAGACTTTGTTGTTACAGAATAATAACATTACAGGCACAATTCCTTCAGAACTGGGGAAGCTTTCAAGGCTGCAAACTTTAGATCTGTCAAATAATTTGTTCAGTGGGGAACTTCCTGCCTCTTTAGGCCACATGAGAAAGCTGCAATACTTGAGGCTCAATAATAATAGTCTTTCTGGAGAATGTCCAGAGTCACTGGCCAACATGACACAACTTGCTTTTCTTGACTTGTCCTACAACAATCTGAGTGAGCCTGTGCCCAGAATTCTGGCCAAATCATTCAGCATTGTTGGAAATCCGCTCATCTGTGGTACTGGGAAAGAAGAAACCTGCCATGGGATGACACTGATGCCTATGTCCATGAACTTAAACAATACCCAAGCTGCTCAACCTTCTGGCAGACAAAAAACACACAAAGTGGCGATTGCCTTCGGTTTGAGCCTAGGATGTCTGTGTCTCATAGTTGTTTGTTTTGGACTATTTCTCTTGTGGAGGCATAAGCATAATCAACAAGCATTCTTTGATGTCAAAGATCGTCATCATGAGGAAGTCTATCTGGGAAACTTGAAGAGGTTCCATTTCAGAGAGTTGCAGATTGCTACCAACAATTTCAGCAACAAGAACATACTAGGAAAAGGCGGGTTTGGACACGTGTACAAGGGAATTCTCCCAGATGGAACAGTGGTAGCAGTGAAGAGGCTTAGAGATGGGAATGCCATTGGAGGAGAAATACAGTTTCAGACTGAAGTTGAGATGATCAGCTTGGCAGTGCACAGAAACCTCCTCAGACTCTATGGTTTCTGTATGACTCCATCTGAAAGGCTTCTGGTTTACCCTTATATGCCTAATGGCAGTGTTGCTTCTCGCCTCAAAGGAAAACCAGTGTTGGACTGGGCAACAAGGAAGCAGATAGCATTAGGAGCAGCAAGGGGACTGCTATACCTTCATGAGCAGTGTGATCCAAAGATAATTCATAGGGATGTGAAAGCTGCAAACATACTGCTTGATGAGTACTATGAGGCAGTGGTTGGAGATTTTGGGTTGGCAAAGCTTTTGGATCATCAAGACTCTCATGTGACTACTGCTGTGAGGGGGACTGTGGGCCACATTGCCCCTGAATACCTCTCCACAGGGCAGTCCTCTGAGAAGACAGATGTCTTTGGATTTGGTATTCTTCTTCTTGAGTTGATTACTGGACTCAGGGCTCTTGACTTTGGAAAAGCTGCCAATCAGAAAGGAGCCATGCTTGATTGGGTGAAGAAAATTCATCAAGAGAAGAAACTTGAACTGCTGGTGGACAAGGATCTGAAGAGCAACTATGACAGAATAGAGCTAGAAGAAATGGTGAAAGTGGCACTTCTGAGTACTCAATACCTTCCAGGACAGAGACCTAAAATGTCAGAAAGATGGGAAGCTTCCCAAAGAGCTCATGACACAACAGCCACAAGCAAATCCAAACATCCCCATGAATTCTCTTCATCAGATCGCTTCTCTGATCTCACTGATGACTCTTCTTTGTTAGTCCAAGACATGGAACTTTCAGGTCCAAGGTGA 1860 0.4435 METLRTQTLLCFMALVWLSYSSSANALLSPKGVNFEVQALMGIKASLVDPHGVLDTWDGDAVDPCSWTMVTCSSDSLVVSLGTPSQSLSGTLSPTIGNLTNLQTLLLQNNNITGTIPSELGKLSRLQTLDLSNNLFSGELPASLGHMRKLQYLRLNNNSLSGECPESLANMTQLAFLDLSYNNLSEPVPRILAKSFSIVGNPLICGTGKEETCHGMTLMPMSMNLNNTQAAQPSGRQKTHKVAIAFGLSLGCLCLIVVCFGLFLLWRHKHNQQAFFDVKDRHHEEVYLGNLKRFHFRELQIATNNFSNKNILGKGGFGHVYKGILPDGTVVAVKRLRDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTPSERLLVYPYMPNGSVASRLKGKPVLDWATRKQIALGAARGLLYLHEQCDPKIIHRDVKAANILLDEYYEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGLRALDFGKAANQKGAMLDWVKKIHQEKKLELLVDKDLKSNYDRIELEEMVKVALLSTQYLPGQRPKMSERWEASQRAHDTTATSKSKHPHEFSSSDRFSDLTDDSSLLVQDMELSGPR 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5548g00007 619 SMART LRR_typ_2 99 122 IPR003591 -
Pral5548g00007 619 SMART LRR_typ_2 171 194 IPR003591 -
Pral5548g00007 619 SMART LRR_typ_2 123 146 IPR003591 -
Pral5548g00007 619 SMART LRR_typ_2 147 170 IPR003591 -
Pral5548g00007 619 FunFam Putative LRR receptor-like serine/threonine-protein kinase 33 215 - -
Pral5548g00007 619 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Pral5548g00007 619 MobiDBLite consensus disorder prediction 566 619 - -
Pral5548g00007 619 Gene3D Transferase(Phosphotransferase) domain 1 383 589 - -
Pral5548g00007 619 SMART serkin_6 306 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5548g00007 619 Gene3D Phosphorylase Kinase; domain 1 275 382 - -
Pral5548g00007 619 ProSiteProfiles Protein kinase domain profile. 306 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5548g00007 619 FunFam Somatic embryogenesis receptor-like kinase 1 383 579 - -
Pral5548g00007 619 SUPERFAMILY Protein kinase-like (PK-like) 290 578 IPR011009 -
Pral5548g00007 619 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Pral5548g00007 619 Pfam Protein kinase domain 307 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5548g00007 619 FunFam Somatic embryogenesis receptor kinase 1 275 382 - -
Pral5548g00007 619 SUPERFAMILY L domain-like 36 198 - -
Pral5548g00007 619 Gene3D Ribonuclease Inhibitor 33 215 IPR032675 -
Pral5548g00007 619 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 571 - -
Pral5548g00007 619 Pfam Leucine Rich repeats (2 copies) 100 138 IPR025875 -
Pral5548g00007 619 MobiDBLite consensus disorder prediction 570 599 - -
Pral5548g00007 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5548g00007 Pral-Chr5548 104058 108308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5548g00007 1 619 Receptor kinase-like Gene Family AT5G16000 73.817 0.0 948
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Pral5548g00007 Pkinase 9.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5548g00007 - - gmx:100798412 1026.54