Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5546g00011 ATGGAAGGAGATCAGCTTCAACAGCAATATGGAGAATCCATACCATTTCCAATTCAAGGTATGGAGTCTGTGGTGGCAACAGTGAGTGGCTATCATGGAACAGAGCGATTCAATCTTATCAAGTTGATTTCACATGCTGGTGCAAATTATGTTGGCGCAATGTCACGATCGATCACGCACCTGATTTGTTGGCGATTTGAAGGAAGGAAATATAATCTTGCTCGGAAGTTCAGAACAGTTATAGTGAATCACCAGTGGATTGAAGATTGTTTAAAGCGAGGAAGGCGTGTTCCAGAGGAATCTTATAGACTGAAAAGTGGAGAAGAGGTGGGGCCCATTTTGCTGCAAGTTCCACTTGCTGTTCGGGTGAGTAGCTCGACTAAGAATAAAGTGCTTAAACATGGATCAGATGACATTGCCTCCAAAAGCCAAACAACTGACATCAGTTCTGGAGCTTCCGGAAATTCTGTCAGGGAAGATTCTTATTTGAACGAGCAGGAGGAGCCAATAACTTCTTCCAGACGGTCAAGGACAAATAAACGAAAGATCTCCGGTAGTAAGGGAGTGGCTACTGATGCTGGTCCTTCTCATCACAGAAGAAGGCTTGTGAAAAGGAATGTTCAAGGAGTTTCAGCTCCTTTACTTGATTTGAACTCTGAGGAGTACCTTAGCAGAATGGATAGATTAAATACTGATACTGTAGCTTCCTCTAGCCTTTCTGGTGGTGTCTCTACTGTTATTATTTTAGAAAATAGAGAAGGATCAGATATTGACTCATATAATCAAAACATAGCTATCGATGCAGCATCAAATGTCACTGGACAAATCAAAGATTTGAATAATTTATCAAGTACAAGAATTTCAGCTCCATGCGTACAAGATGCCTTGCCTACTGCCGAGCAAATATCAGTAGACGAGTGTTTTGAAAAGGCCGCAGATGGTATTCAGGATGGTCATGTGGCTGACTTACCCAAGCCAACAGAGTTGTCATGCGTCATATGTTTGACGGAATTCAGCTCAACACGGGGGGTTTTGCCATGTGGACATAGGTTTTGTTATTCTTGTATCCAGAGTTGGGTTGATCATAGGACTACAATGGGAAAAATCTCAACGTGTCCCTTGTGCAAGTCAAGGTTTGACAGCATCATTAAATATGAGGATTTGGCCGAGGATCAAAAGATATATTCCCAAACAATCCCATGTGGCATTCCAATCTCAGATATTATTTTTCTTATGGATCGAGAGCAACCAAATTATGGTTTTGAGTCCTCACAGAGAGGTGCTTGTGTTGTTTGCCGGGGACGAGAACCTGAGGATCTGCTCATGAGTTGCCATCTTTGCCACATTCGACAAATCCATTCCTATTGCCTGGATCCTCCATTATTGCCATGGACATGCAATCACTGTAAGGATCTTCGGATGCTTTACCATAATCATTCACATTAG 1446 0.4225 MEGDQLQQQYGESIPFPIQGMESVVATVSGYHGTERFNLIKLISHAGANYVGAMSRSITHLICWRFEGRKYNLARKFRTVIVNHQWIEDCLKRGRRVPEESYRLKSGEEVGPILLQVPLAVRVSSSTKNKVLKHGSDDIASKSQTTDISSGASGNSVREDSYLNEQEEPITSSRRSRTNKRKISGSKGVATDAGPSHHRRRLVKRNVQGVSAPLLDLNSEEYLSRMDRLNTDTVASSSLSGGVSTVIILENREGSDIDSYNQNIAIDAASNVTGQIKDLNNLSSTRISAPCVQDALPTAEQISVDECFEKAADGIQDGHVADLPKPTELSCVICLTEFSSTRGVLPCGHRFCYSCIQSWVDHRTTMGKISTCPLCKSRFDSIIKYEDLAEDQKIYSQTIPCGIPISDIIFLMDREQPNYGFESSQRGACVVCRGREPEDLLMSCHLCHIRQIHSYCLDPPLLPWTCNHCKDLRMLYHNHSH 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5546g00011 481 ProSiteProfiles Zinc finger RING-type profile. 331 376 IPR001841 -
Pral5546g00011 481 Pfam Ring finger domain 330 376 IPR001841 -
Pral5546g00011 481 ProSiteProfiles BRCT domain profile. 13 104 IPR001357 -
Pral5546g00011 481 SMART BRCT_7 18 94 IPR001357 -
Pral5546g00011 481 MobiDBLite consensus disorder prediction 138 160 - -
Pral5546g00011 481 Pfam twin BRCT domain 24 86 IPR001357 -
Pral5546g00011 481 MobiDBLite consensus disorder prediction 161 175 - -
Pral5546g00011 481 SMART ring_2 331 375 IPR001841 -
Pral5546g00011 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 412 474 IPR013083 -
Pral5546g00011 481 MobiDBLite consensus disorder prediction 132 204 - -
Pral5546g00011 481 SUPERFAMILY FYVE/PHD zinc finger 416 471 IPR011011 -
Pral5546g00011 481 SUPERFAMILY BRCT domain 17 105 IPR036420 -
Pral5546g00011 481 Gene3D BRCT domain 18 109 IPR036420 -
Pral5546g00011 481 SUPERFAMILY RING/U-box 323 382 - -
Pral5546g00011 481 ProSitePatterns Zinc finger RING-type signature. 347 356 IPR017907 -
Pral5546g00011 481 PANTHER F5A8.9 PROTEIN 167 478 - -
Pral5546g00011 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 326 395 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5546g00011 Pral-Chr5546 75704 80406 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5546g00011 58 110 Core DNA Replication Machinery Family AT4G02110 50.000 1.42e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5546g00011 - - pcin:129291305 766.148