Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5546g00010 ATGGAAGGAGATCAGCTTCAACAGCAATATGGAGAATCCATACCATTTCCAATTCAAGGTATGGAGTCTGTGGTGGCAACAGTGAGTGGCTATCATGGAACAGAGCGATTCAATCTTATCAAGTTGATTTCACATGCTGGTGCAAATTATGTTGGCGCAATGTCACGATCGATCACGCACCTGATTTGTTGGCGATTTGAAGGAAGGAAATATAATCTTGCTCGGAAGTTCAGAACAGTTATAGTGAATCACCAGTGGATTGAAGATTGTTTAAAGCGAGGAAGGCGTGTTCCAGAGGAATCTTATAGACTGAAAAGTGGAGAAGAGGTGGGGCCCATTTTGCTGCAAGTTCCACTTGCTGTTCGGGTGAGTAGCTCGACTAAGAATAAAGTGCTTAAACATGGATCAGATGACATTGCCTCCAAAAGCCAAACAACTGACATCAGTTCTGGAGCTTCCGGAAATTCTGTCAGGGAAGATTCTTATTTGAACGAGCAGGAGGAGCCAATAACTTCTTCCAGACGGTCAAGGACAAATAAACGAAAGATCTCCGGTAGTAAGGGAGTGGCTACTGATGCTGGTCCTTCTCATCACAGAAGAAGGCTTGTGAAAAGGAATGTTCAAGGAGTTTCAGCTCCTTTACTTGATTTGAACTCTGAGGAGTACCTTAGCAGAATGGATAGATTAAATACTGATACTGTAGCTTCCTCTAGCCTTTCTGCATCAAATGTCACTGGACAAATCAAAGATTTGAATAATTTATCAAGTACAAGAATTTCAGCTCCATGCGTACAAGATGCCTTGCCTACTGCCGAGCAAATATCAGTAGACGAGTGTTTTGAAAAGGCCGCAGATGGTATTCAGGATGGTCATGTGGCTGACTTACCCAAGCCAACAGAGTTGTCATGCGTCATATGTTTGACGGAATTCAGCTCAACACGGGGGGTTTTGCCATGTGGACATAGGTTTTGTTATTCTTGTATCCAGAGTTGGGTTGATCATAGGACTACAATGGGAAAAATCTCAACGTGTCCCTTGTGCAAGTCAAGGTTTGACAGCATCATTAAATATGAGGATTTGGCCGAGGATCAAAAGATATATTCCCAAACAATCCCATGTGGCATTCCAATCTCAGATATTATTTTTCTTATGGATCGAGAGCAACCAAATTATGGTTTTGAGTCCTCACAGAGAGGTGCTTGTGTTGTTTGCCGGGGACGAGAACCTGAGGATCTGCTCATGAGTTGCCATCTTTGCCACATTCGACAAATCCATTCCTATTGCCTGGATCCTCCATTATTGCCATGGACATGCAATCACTGTAAGGATCTTCGGATGCTTTACCATAATCATTCACATTAG 1362 0.4288 MEGDQLQQQYGESIPFPIQGMESVVATVSGYHGTERFNLIKLISHAGANYVGAMSRSITHLICWRFEGRKYNLARKFRTVIVNHQWIEDCLKRGRRVPEESYRLKSGEEVGPILLQVPLAVRVSSSTKNKVLKHGSDDIASKSQTTDISSGASGNSVREDSYLNEQEEPITSSRRSRTNKRKISGSKGVATDAGPSHHRRRLVKRNVQGVSAPLLDLNSEEYLSRMDRLNTDTVASSSLSASNVTGQIKDLNNLSSTRISAPCVQDALPTAEQISVDECFEKAADGIQDGHVADLPKPTELSCVICLTEFSSTRGVLPCGHRFCYSCIQSWVDHRTTMGKISTCPLCKSRFDSIIKYEDLAEDQKIYSQTIPCGIPISDIIFLMDREQPNYGFESSQRGACVVCRGREPEDLLMSCHLCHIRQIHSYCLDPPLLPWTCNHCKDLRMLYHNHSH 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5546g00010 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 367 IPR013083 -
Pral5546g00010 453 ProSiteProfiles BRCT domain profile. 13 104 IPR001357 -
Pral5546g00010 453 SUPERFAMILY BRCT domain 17 105 IPR036420 -
Pral5546g00010 453 SUPERFAMILY FYVE/PHD zinc finger 388 443 IPR011011 -
Pral5546g00010 453 ProSitePatterns Zinc finger RING-type signature. 319 328 IPR017907 -
Pral5546g00010 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 384 446 IPR013083 -
Pral5546g00010 453 Pfam Ring finger domain 302 348 IPR001841 -
Pral5546g00010 453 SMART BRCT_7 18 94 IPR001357 -
Pral5546g00010 453 MobiDBLite consensus disorder prediction 138 160 - -
Pral5546g00010 453 MobiDBLite consensus disorder prediction 161 175 - -
Pral5546g00010 453 MobiDBLite consensus disorder prediction 132 204 - -
Pral5546g00010 453 PANTHER F5A8.9 PROTEIN 242 450 - -
Pral5546g00010 453 Pfam twin BRCT domain 24 86 IPR001357 -
Pral5546g00010 453 Gene3D BRCT domain 18 109 IPR036420 -
Pral5546g00010 453 SMART ring_2 303 347 IPR001841 -
Pral5546g00010 453 SUPERFAMILY RING/U-box 295 354 - -
Pral5546g00010 453 ProSiteProfiles Zinc finger RING-type profile. 303 348 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5546g00010 Pral-Chr5546 75704 80406 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5546g00010 58 110 Core DNA Replication Machinery Family AT4G02110 50.000 1.36e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5546g00010 - - pcin:129291305 714.916