Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5546g00009 ATGGAAGGAGATCAGCTTCAACAGCAATATGGAGAATCCATACCATTTCCAATTCAAGGTATGGAGTCTGTGGTGGCAACAGTGAGTGGCTATCATGGAACAGAGCGATTCAATCTTATCAAGTTGATTTCACATGCTGGTGCAAATTATGTTGGCGCAATGTCACGATCGATCACGCACCTGATTTGTTGGCGATTTGAAGGAAGGAAATATAATCTTGCTCGGAAGTTCAGAACAGTTATAGTGAATCACCAGTGGATTGAAGATTGTTTAAAGCGAGGAAGGCGTGTTCCAGAGGAATCTTATAGACTGAAAAGTGGAGAAGAGGTGGGGCCCATTTTGCTGCAAGTTCCACTTGCTGTTCGGGTGAGTAGCTCGACTAAGAATAAAGTGCTTAAACATGGATCAGATGACATTGCCTCCAAAAGCCAAACAACTGACATCAGTTCTGGAGCTTCCGGAAATTCTGTCAGGGAAGATTCTTATTTGAACGAGGAGGAGCCAATAACTTCTTCCAGACGGTCAAGGACAAATAAACGAAAGATCTCCGGTAGTAAGGGAGTGGCTACTGATGCTGGTCCTTCTCATCACAGAAGAAGGCTTGTGAAAAGGAATGTTCAAGGAGTTTCAGCTCCTTTACTTGATTTGAACTCTGAGGAGTACCTTAGCAGAATGGATAGATTAAATACTGATACTGTAGCTTCCTCTAGCCTTTCTGGTGGTGTCTCTACTGTTATTATTTTAGAAAATAGAGAAGGATCAGATATTGACTCATATAATCAAAACATAGCTATCGATGCAGCATCAAATGTCACTGGACAAATCAAAGATTTGAATAATTTATCAAGTACAAGAATTTCAGCTCCATGCGTACAAGATGCCTTGCCTACTGCCGAGCAAATATCAGTAGACGAGTGTTTTGAAAAGGCCGCAGATGGTATTCAGGATGGTCATGTGGCTGACTTACCCAAGCCAACAGAGTTGTCATGCGTCATATGTTTGACGGAATTCAGCTCAACACGGGGGGTTTTGCCATGTGGACATAGGTTTTGTTATTCTTGTATCCAGAGTTGGGTTGATCATAGGACTACAATGGGAAAAATCTCAACGTGTCCCTTGTGCAAGTCAAGGTTTGACAGCATCATTAAATATGAGGATTTGGCCGAGGATCAAAAGATATATTCCCAAACAATCCCATGTGGCATTCCAATCTCAGATATTATTTTTCTTATGGATCGAGAGCAACCAAATTATGGTTTTGAGTCCTCACAGAGAGGTGCTTGTGTTGTTTGCCGGGGACGAGAACCTGAGGATCTGCTCATGAGTTGCCATCTTTGCCACATTCGACAAATCCATTCCTATTGCCTGGATCCTCCATTATTGCCATGGACATGCAATCACTGTAAGGATCTTCGGATGCTTTACCATAATCATTCACATTAG 1443 0.422 MEGDQLQQQYGESIPFPIQGMESVVATVSGYHGTERFNLIKLISHAGANYVGAMSRSITHLICWRFEGRKYNLARKFRTVIVNHQWIEDCLKRGRRVPEESYRLKSGEEVGPILLQVPLAVRVSSSTKNKVLKHGSDDIASKSQTTDISSGASGNSVREDSYLNEEEPITSSRRSRTNKRKISGSKGVATDAGPSHHRRRLVKRNVQGVSAPLLDLNSEEYLSRMDRLNTDTVASSSLSGGVSTVIILENREGSDIDSYNQNIAIDAASNVTGQIKDLNNLSSTRISAPCVQDALPTAEQISVDECFEKAADGIQDGHVADLPKPTELSCVICLTEFSSTRGVLPCGHRFCYSCIQSWVDHRTTMGKISTCPLCKSRFDSIIKYEDLAEDQKIYSQTIPCGIPISDIIFLMDREQPNYGFESSQRGACVVCRGREPEDLLMSCHLCHIRQIHSYCLDPPLLPWTCNHCKDLRMLYHNHSH 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5546g00009 480 Pfam Ring finger domain 329 375 IPR001841 -
Pral5546g00009 480 ProSiteProfiles BRCT domain profile. 13 104 IPR001357 -
Pral5546g00009 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 325 394 IPR013083 -
Pral5546g00009 480 SUPERFAMILY RING/U-box 322 381 - -
Pral5546g00009 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 411 473 IPR013083 -
Pral5546g00009 480 MobiDBLite consensus disorder prediction 138 159 - -
Pral5546g00009 480 SMART BRCT_7 18 94 IPR001357 -
Pral5546g00009 480 Pfam twin BRCT domain 24 86 IPR001357 -
Pral5546g00009 480 SUPERFAMILY FYVE/PHD zinc finger 415 470 IPR011011 -
Pral5546g00009 480 SMART ring_2 330 374 IPR001841 -
Pral5546g00009 480 SUPERFAMILY BRCT domain 17 105 IPR036420 -
Pral5546g00009 480 MobiDBLite consensus disorder prediction 160 174 - -
Pral5546g00009 480 MobiDBLite consensus disorder prediction 132 200 - -
Pral5546g00009 480 Gene3D BRCT domain 18 109 IPR036420 -
Pral5546g00009 480 ProSitePatterns Zinc finger RING-type signature. 346 355 IPR017907 -
Pral5546g00009 480 PANTHER F5A8.9 PROTEIN 141 477 - -
Pral5546g00009 480 ProSiteProfiles Zinc finger RING-type profile. 330 375 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5546g00009 Pral-Chr5546 75704 80406 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5546g00009 58 110 Core DNA Replication Machinery Family AT4G02110 50.000 1.46e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5546g00009 - - pcin:129291305 764.607