Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5546g00008 ATGGAGTCTGTGGTGGCAACAGTGAGTGGCTATCATGGAACAGAGCGATTCAATCTTATCAAGTTGATTTCACATGCTGGTGCAAATTATGTTGGCGCAATGTCACGATCGATCACGCACCTGATTTGTTGGCGATTTGAAGGAAGGAAATATAATCTTGCTCGGAAGTTCAGAACAGTTATAGTGAATCACCAGTGGATTGAAGATTGTTTAAAGCGAGGAAGGCGTGTTCCAGAGGAATCTTATAGACTGAAAAGTGGAGAAGAGGTGGGGCCCATTTTGCTGCAAGTTCCACTTGCTGTTCGGGTGAGTAGCTCGACTAAGAATAAAGTGCTTAAACATGGATCAGATGACATTGCCTCCAAAAGCCAAACAACTGACATCAGTTCTGGAGCTTCCGGAAATTCTGTCAGGGAAGATTCTTATTTGAACGAGCAGGAGGAGCCAATAACTTCTTCCAGACGGTCAAGGACAAATAAACGAAAGATCTCCGGTAGTAAGGGAGTGGCTACTGATGCTGGTCCTTCTCATCACAGAAGAAGGCTTGTGAAAAGGAATGTTCAAGGAGTTTCAGCTCCTTTACTTGATTTGAACTCTGAGGAGTACCTTAGCAGAATGGATAGATTAAATACTGATACTGTAGCTTCCTCTAGCCTTTCTGGTGGTGTCTCTACTGTTATTATTTTAGAAAATAGAGAAGGATCAGATATTGACTCATATAATCAAAACATAGCTATCGATGCAGCATCAAATGTCACTGGACAAATCAAAGATTTGAATAATTTATCAAGTACAAGAATTTCAGCTCCATGCGTACAAGATGCCTTGCCTACTGCCGAGCAAATATCAGTAGACGAGTGTTTTGAAAAGGCCGCAGATGGTATTCAGGATGGTCATGTGGCTGACTTACCCAAGCCAACAGAGTTGTCATGCGTCATATGTTTGACGGAATTCAGCTCAACACGGGGGGTTTTGCCATGTGGACATAGGTTTTGTTATTCTTGTATCCAGAGTTGGGTTGATCATAGGACTACAATGGGAAAAATCTCAACGTGTCCCTTGTGCAAGTCAAGGTTTGACAGCATCATTAAATATGAGGATTTGGCCGAGGATCAAAAGATATATTCCCAAACAATCCCATGTGGCATTCCAATCTCAGATATTATTTTTCTTATGGATCGAGAGCAACCAAATTATGGTTTTGAGTCCTCACAGAGAGGTGCTTGTGTTGTTTGCCGGGGACGAGAACCTGAGGATCTGCTCATGAGTTGCCATCTTTGCCACATTCGACAAATCCATTCCTATTGCCTGGATCCTCCATTATTGCCATGGACATGCAATCACTGTAAGGATCTTCGGATGCTTTACCATAATCATTCACATTAG 1386 0.4235 MESVVATVSGYHGTERFNLIKLISHAGANYVGAMSRSITHLICWRFEGRKYNLARKFRTVIVNHQWIEDCLKRGRRVPEESYRLKSGEEVGPILLQVPLAVRVSSSTKNKVLKHGSDDIASKSQTTDISSGASGNSVREDSYLNEQEEPITSSRRSRTNKRKISGSKGVATDAGPSHHRRRLVKRNVQGVSAPLLDLNSEEYLSRMDRLNTDTVASSSLSGGVSTVIILENREGSDIDSYNQNIAIDAASNVTGQIKDLNNLSSTRISAPCVQDALPTAEQISVDECFEKAADGIQDGHVADLPKPTELSCVICLTEFSSTRGVLPCGHRFCYSCIQSWVDHRTTMGKISTCPLCKSRFDSIIKYEDLAEDQKIYSQTIPCGIPISDIIFLMDREQPNYGFESSQRGACVVCRGREPEDLLMSCHLCHIRQIHSYCLDPPLLPWTCNHCKDLRMLYHNHSH 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5546g00008 461 SMART ring_2 311 355 IPR001841 -
Pral5546g00008 461 Pfam Ring finger domain 310 356 IPR001841 -
Pral5546g00008 461 Gene3D BRCT domain 1 89 IPR036420 -
Pral5546g00008 461 ProSiteProfiles BRCT domain profile. 1 84 IPR001357 -
Pral5546g00008 461 MobiDBLite consensus disorder prediction 141 155 - -
Pral5546g00008 461 MobiDBLite consensus disorder prediction 118 140 - -
Pral5546g00008 461 ProSitePatterns Zinc finger RING-type signature. 327 336 IPR017907 -
Pral5546g00008 461 SUPERFAMILY BRCT domain 1 85 IPR036420 -
Pral5546g00008 461 ProSiteProfiles Zinc finger RING-type profile. 311 356 IPR001841 -
Pral5546g00008 461 SMART BRCT_7 1 74 IPR001357 -
Pral5546g00008 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 375 IPR013083 -
Pral5546g00008 461 MobiDBLite consensus disorder prediction 112 184 - -
Pral5546g00008 461 Pfam twin BRCT domain 4 66 IPR001357 -
Pral5546g00008 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 392 454 IPR013083 -
Pral5546g00008 461 SUPERFAMILY RING/U-box 303 362 - -
Pral5546g00008 461 PANTHER F5A8.9 PROTEIN 147 458 - -
Pral5546g00008 461 SUPERFAMILY FYVE/PHD zinc finger 396 451 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5546g00008 Pral-Chr5546 75704 80415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5546g00008 38 90 Core DNA Replication Machinery Family AT4G02110 50.000 1.29e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5546g00008 - - pcin:129291305 742.265