Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5538g00010 ATGTATTGCTTTCACTGCTTCACCAGACGCATAAGACGAAGGTCATCAAAACCTGAGCTCAAAGAAGAATTGAAGTCCCGAAACTCCGAGGTCAATAGAATTACCGAATCTTTGTCCGCATCACCCTCACCACGCGGGATTCCAGAATTGTATGAAGAGAAGGCTCACAATTTGCGTGTTTTCTCCTTCGCTGAACTCCAGCGAGCTACAAATAATTTCAGTAGGCTTTTGAAGATTGGTCAGGGTGGGTTTGGGAGTGTATTTAAAGGTTCAATCCAGGCCCCTGGTGGGAATAATAAGGAGTTTATTTCGGTTGCCATCAAAAGGCTCGAACCTGATGGATTCCAGGGTCATAAGCAATGGTTAGCTGAAGTTCAGTTTCTCGGCGTTGTGGAGCACCCAAATCTTGTCAAACTAATTGGATATTGTGCTGTGGATACTGAAAGAGGGATCCAGAGACTACTTGTATATGAATACATGCCGAATAAAAGCTTGGAATATCATCTTTTCCACAAGGCATATGATCCTCTTCCTTGGAAAACAAGACTTGAAATAGCACTTGGAGCAGCTCGAGGGTTGGCATATCTCCATGAAGAATTAGAAGTTCAGGTGATATATAGAGATTTTAAAACCTCAAATGTGTTACTGGACGAAAATTTTAGGCCAAAACTTTCTGATTTTGGACTTGCTAGGGAGGGGCCAATAGCTGGGCATACTCATGTTTCAACTGCAGTGATGGGAACATATGGCTATGCTGCTCCAGATTACATTGAGACAGGGCATCTCACTACAAAGAGTGATGTATGGAGTTTTGGTGTGGTTCTCTATGAAATTCTTACTGGCAGGCGATCACTGGATCGAAACCGGCCAAAGACGGAACAGAAGCTTTTGGAGTGGGTGAAACAGCACCCTACTAACAGAAGAAGCTTCAGCTTGATAATTGATCCAAGAGTTGAAGGCCAATATTCCATAAACGGAGCGCGAAATATCGCCAAGCTTGCAGATGATTGTCTGAGTAAAAGTGCTAAAGATCGACCAAAGATGAGTCAGGTGGTGGAGAGGTTGAAGCAAATAATCATCATAAATTCAGATGAAGGTAATCCTGATGAGAAAGATATTAACCTGTTGGAAAATGACGATTTTCCTGATAAAGAAAAAAAGCTAAATCAACCAAACCCTTCAAAGTTGTGGCAAAGGAGGATGGATCATCTTGCAAAACTTGGTGAGCATGTGGAGACTGCTATAGGACGAAGATTTTTGATCCTACAAAAGGCCAAAGCTGGTTCTTAG 1290 0.424 MYCFHCFTRRIRRRSSKPELKEELKSRNSEVNRITESLSASPSPRGIPELYEEKAHNLRVFSFAELQRATNNFSRLLKIGQGGFGSVFKGSIQAPGGNNKEFISVAIKRLEPDGFQGHKQWLAEVQFLGVVEHPNLVKLIGYCAVDTERGIQRLLVYEYMPNKSLEYHLFHKAYDPLPWKTRLEIALGAARGLAYLHEELEVQVIYRDFKTSNVLLDENFRPKLSDFGLAREGPIAGHTHVSTAVMGTYGYAAPDYIETGHLTTKSDVWSFGVVLYEILTGRRSLDRNRPKTEQKLLEWVKQHPTNRRSFSLIIDPRVEGQYSINGARNIAKLADDCLSKSAKDRPKMSQVVERLKQIIIINSDEGNPDEKDINLLENDDFPDKEKKLNQPNPSKLWQRRMDHLAKLGEHVETAIGRRFLILQKAKAGS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5538g00010 429 Gene3D Phosphorylase Kinase; domain 1 48 159 - -
Pral5538g00010 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Pral5538g00010 429 SUPERFAMILY Protein kinase-like (PK-like) 55 355 IPR011009 -
Pral5538g00010 429 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 160 367 - -
Pral5538g00010 429 Pfam Protein tyrosine and serine/threonine kinase 78 355 IPR001245 GO:0004672|GO:0006468
Pral5538g00010 429 Gene3D Transferase(Phosphotransferase) domain 1 160 379 - -
Pral5538g00010 429 PANTHER OS01G0588500 PROTEIN-RELATED 31 358 - -
Pral5538g00010 429 ProSitePatterns Protein kinases ATP-binding region signature. 79 108 IPR017441 GO:0005524
Pral5538g00010 429 CDD STKc_IRAK 79 358 - -
Pral5538g00010 429 ProSiteProfiles Protein kinase domain profile. 73 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5538g00010 Pral-Chr5538 138465 142068 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5538g00010 1 355 Glycoside Hydrolase AT3G07070 44.658 7.51e-94 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pral5538g00010 PK_Tyr_Ser-Thr 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5538g00010 - - gmx:100784625 608.216