Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5538g00006 ATGGCTGCCGCTTCTCCACCACCTTACACTCTAAACGTCGTCGGATCAGACTCCAATAATCCCTTCACCGAGACGACTTCTACTTCTGAGGATCGTGCTTCTTCTCAACACTTCCCTTCGGCGTTTCAGAATCTCAACACCAGCGTTCTCATTATTGTTATCGTTCTCGCCGTTACTGTCATTGTGTCGCTCTCTCTCTGCTTGCTCCTTCGTCACCTCAATCTCCGGTGCCTCCGTTGGCTGTCTCCCTCGTCTTTGTCGTCTTCATTCAGGAGGAATGCCACGCACACGACTGCGACTGCTACTACTACGCCTGTTTTCTCCTCCAGCCGTCGTGTCTCGCCGGAGATTCCCTCGGCTTCCGTTATTGACTCGCTGCCGATCTTCACGTTTTCTTCTATTGCTCGTCGCTCTTCGGCTTCTGATACTACCGGCGGAGACTGTGCAGTCTGCCTCTCGAAATTTGAGCAGAGAGACCTCCTCCGCCTTCTTCCATTGTGTTGTCACGCCTTTCATGTGGAATGCATCGACACTTGGCTTCAGTCGAATTTGACCTGTCCGCTATGCCGATCTGCGATTTTTGCCTCTGATTCGGACCTAATGAAGGTTCTCCGATCGTCCTCCGGCGGCGGTGGAGGCAGCGATAGTTTCCGGCTCGAAATTGGAAACATTAGCCGGCGTGGAACGGCACCACCGGACGTCGTTGCAGACGCGAGTGCGAGGTCGGGGTCGAGGTCGTATTCTGTTGGCTCGTTCGAGTATTTTGTAGAGGAGGATTACGAGATTCCTATCAGCCACGCGCATCGGAGGAGCGTGTCGGATAATAAGGACGAATCGGTAGTTATAGAATCTCAAGCTGCGGCGGCGGCTCAGTCGATCCACGAGGCGAGCTTAGCCGCCGATGTAGCCGGCAGCGGGAGGAGCTGGCTGAAGGAATACGTCGACAGGCTCTCATCTTCTATATCATCCCGAACAGTATCTTTTCGAGGCTCTGGAAGGTTCTTTAACAGCGGAGGTGCTAGCCACCGAAGCGACGCCGCCGCCTTCTCGGCCGAGGACTGCGACGTGGAGGCAATTAGATTAGGCGAAGAAATTAGCGAGACATTTCGATGGCTCTCAGGGGTATGA 1128 0.5417 MAAASPPPYTLNVVGSDSNNPFTETTSTSEDRASSQHFPSAFQNLNTSVLIIVIVLAVTVIVSLSLCLLLRHLNLRCLRWLSPSSLSSSFRRNATHTTATATTTPVFSSSRRVSPEIPSASVIDSLPIFTFSSIARRSSASDTTGGDCAVCLSKFEQRDLLRLLPLCCHAFHVECIDTWLQSNLTCPLCRSAIFASDSDLMKVLRSSSGGGGGSDSFRLEIGNISRRGTAPPDVVADASARSGSRSYSVGSFEYFVEEDYEIPISHAHRRSVSDNKDESVVIESQAAAAAQSIHEASLAADVAGSGRSWLKEYVDRLSSSISSRTVSFRGSGRFFNSGGASHRSDAAAFSAEDCDVEAIRLGEEISETFRWLSGV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5538g00006 375 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Pral5538g00006 375 MobiDBLite consensus disorder prediction 1 33 - -
Pral5538g00006 375 Pfam Ring finger domain 147 190 IPR001841 -
Pral5538g00006 375 FunFam E3 ubiquitin-protein ligase ATL6 108 196 - -
Pral5538g00006 375 CDD RING-H2_EL5-like 147 190 - -
Pral5538g00006 375 SMART ring_2 148 189 IPR001841 -
Pral5538g00006 375 MobiDBLite consensus disorder prediction 11 33 - -
Pral5538g00006 375 SUPERFAMILY RING/U-box 123 196 - -
Pral5538g00006 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 44 266 - -
Pral5538g00006 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 194 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5538g00006 Pral-Chr5538 96923 98353 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5538g00006 120 195 C3H Transcription Factor Family AT2G18650 55.263 3.19e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5538g00006 K10663 - gmx:100776516 353.984