LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5537g00009	ATGAGGCTTCCTTCTTCTTTTTACATTCTGCTTCTGTCTCTGCTTTCTGCAACTCTCCATTGTTTCTGCCAACAAGAATACCTTAACAACACAGTCTATGACTGCAATTTCAACCTCACAGCAAAAGCAGGATATGTCTGCAATGGCCTCCAAAAGTCATGCACTTCCTTTGTAACTTTCAGATCAAGGCCTCCATACGATACTCCTCAAAGCATCGCCAATCTTCTTAGCTCAGAAGCAAGTTCCATAGCCTCCATCAACAACATCTCAAGCAATAACATAAACAGCAATATTCCTTCCAATCGGACTGTGATTGTTCCTGTGTATTGTTCATGTTCAGGCAATATCTACCAGCATGCCACTTCTTATGAGATGAAAAAAGGAGACTACTACTTCAAATTGGCCAACAAGACTTATCAAGGCCTTGTCAATTGCCAGATGCTAGTACGTCAGAATTATTACCTTCCTGTCAATATCAGTATTGGAGCTCAAGTTTCAGTTCCAGTGCTGTGTGCTTGTCCCACAGAGAGACAGATCTCAGATGGGGTCTCTTCCTTGCTGGTTCATACCCTTGATTATGGGGATACGCTTGAATCAGTTGCAGAGTCCTATGGTGTGGATCAACACAGTTTGATAACTGCTAATGAGTTGCCTTCAAATGCCACTATCTCTGCTTTGACACCTATTTTAGTTCCACTTAAGCCTTCTTCCTGTAAACTCAATCCACATATATTCTACTGCTCCTGTTCATTCTTTCAGCTTTACCTTTCAAATTCAAGTTTCAAACCTCCCAATTGTGGTCATCTTCAACCACATGCAAACCGTTTCCCTGTAAGATTGGTTGCTTCCATAGGTGTTGGTACTGGTGCCATCTTTTTGTGCTTATTTCTTTTGGGCTACAAGTCACATCAATGCATAAAACGAAAGCAAGAAAGAGTTCGTAAGGAAAAGTTGTTTAGGCAAAATGGTGGCCTTCTGCTGGAAGAAAAGATGTCAAATTATGGAAATAGAGAAATTGCAAAACTTTTTACAGCAGAAGAACTGGAACGAGCAACAGATAACTATAATCAAAGTAGGTTTCTTGGTCAAGGTGGGTATGGAACCGTTTATAAAGGAATGCTACCAGATGGTACCATTGTTGCAGTTAAGAAGTCCAGAGACATTGCAAGAAACCAGATTGAATCTTTTGTTAATGAAGTGGTGATTCTATCCCAAATAAACCACAGGAACATTGTTAAACTCCTAGGTTGTTGCCTAGAGACTGAAGACCCATTATTAGTTTATGAGTTTATTCCCAATCGAACACTTTCTCACCACATCCATAACGAGGAGCTTAAATCAAAACTTTCCTGGGACAACCGCTTTAGAATCGCTTGTGAGGTTGCCGGGGCAGTGGCGTATATGCATTTTGCAGCTTCCATTCCCATCTTCCATAGAGACATCAAAGCTTCCAACATACTCCTGGATCATAATTACAACTCTAAAGTCTCTGATTTTGGGTCTTCCAGATCCGTTCCGCATGATAGGACTCACTTAACCACAGCAGTACAAGGCACTTTTGGGTACCTTGATCCTGTATACTTCCAATCAAGCCAATTCACTGATAAAAGTGATGTATATAGTTTTGGGGTTGTACTTGTAGAGCTCATTACTGGAAGAAAACCCTTCTTGGAACAAGCTGAGGGTCAAAATCTTGTTGCAGAATTCATTTCTTTGATGAAGAAGGACCAAGTTTTCAAGATTTTAGACGCCAGGGTTGTTCATGAAGGAGGGAAAGATGACATTCTTGGCATTGCAAATCTTGCAATGAGATGCTTGAGACTGAATAGAAACAAGAGACCCACAATGAGAGAGGTTTCAACAGAGCTAGAAGCACTGAGAAAAACACAAAATGCCTTAGAGATCACTGAATGCTCTCATGAGTTTCCAGATGATAAGGACACCATCTCTTCTTTCGAAACAATCCAAGAATCCACAGAAGAAAGCATGTCATTATTTCTCGGAATGGATTCCACATCCATCCGAAAGTGA	2031	0.4072	MRLPSSFYILLLSLLSATLHCFCQQEYLNNTVYDCNFNLTAKAGYVCNGLQKSCTSFVTFRSRPPYDTPQSIANLLSSEASSIASINNISSNNINSNIPSNRTVIVPVYCSCSGNIYQHATSYEMKKGDYYFKLANKTYQGLVNCQMLVRQNYYLPVNISIGAQVSVPVLCACPTERQISDGVSSLLVHTLDYGDTLESVAESYGVDQHSLITANELPSNATISALTPILVPLKPSSCKLNPHIFYCSCSFFQLYLSNSSFKPPNCGHLQPHANRFPVRLVASIGVGTGAIFLCLFLLGYKSHQCIKRKQERVRKEKLFRQNGGLLLEEKMSNYGNREIAKLFTAEELERATDNYNQSRFLGQGGYGTVYKGMLPDGTIVAVKKSRDIARNQIESFVNEVVILSQINHRNIVKLLGCCLETEDPLLVYEFIPNRTLSHHIHNEELKSKLSWDNRFRIACEVAGAVAYMHFAASIPIFHRDIKASNILLDHNYNSKVSDFGSSRSVPHDRTHLTTAVQGTFGYLDPVYFQSSQFTDKSDVYSFGVVLVELITGRKPFLEQAEGQNLVAEFISLMKKDQVFKILDARVVHEGGKDDILGIANLAMRCLRLNRNKRPTMREVSTELEALRKTQNALEITECSHEFPDDKDTISSFETIQESTEESMSLFLGMDSTSIRK	676

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5537g00009	676	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	476	488	IPR008271	GO:0004672\|GO:0006468
	Pral5537g00009	676	SUPERFAMILY	Protein kinase-like (PK-like)	338	623	IPR011009	-
	Pral5537g00009	676	CDD	LysM	188	225	IPR018392	-
	Pral5537g00009	676	SMART	serkin_6	355	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5537g00009	676	Coils	Coil	616	636	-	-
	Pral5537g00009	676	Pfam	Protein kinase domain	355	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5537g00009	676	CDD	STKc_IRAK	361	626	-	-
	Pral5537g00009	676	ProSitePatterns	Protein kinases ATP-binding region signature.	361	384	IPR017441	GO:0005524
	Pral5537g00009	676	FunFam	Wall-associated receptor kinase 2	325	430	-	-
	Pral5537g00009	676	ProSiteProfiles	LysM domain profile.	187	231	IPR018392	-
	Pral5537g00009	676	Gene3D	LysM domain	176	240	IPR036779	-
	Pral5537g00009	676	ProSiteProfiles	Protein kinase domain profile.	355	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5537g00009	676	Gene3D	Phosphorylase Kinase; domain 1	324	430	-	-
	Pral5537g00009	676	FunFam	Wall-associated receptor kinase 2	431	644	-	-
	Pral5537g00009	676	Pfam	LysM domain	189	224	IPR018392	-
	Pral5537g00009	676	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	104	631	IPR045274	GO:0007166
	Pral5537g00009	676	Gene3D	Transferase(Phosphotransferase) domain 1	431	648	-	-
	Pral5537g00009	676	SMART	LysM_2	188	232	IPR018392	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5537g00009	Pral-Chr5537	73835	77338	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5537g00009	264	630	Receptor kinase-like Gene Family	AT1G16130	51.081	2.63e-128	395

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Pral5537g00009		Pkinase	1.1e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5537g00009	-		-	gmx:100795455	826.624