Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5537g00008 ATGAAGCTTCCTTCATTTCACATTCTACTGCTCCTGTTTGTGCTTTCTCAATCCCTCCATTGTTGCTGCCAACCTGACCCGGTCACCGACGCACAATGCACTTTCAACGAGACAACAAAATTAGGATACAAGTGCAACGGCTTCCAAAATTCATGCACCTCCTACGTTGCTTACAGATCCAATCCTCGCTATAATACCGCTCTAACCATTGCCAATCTTCTTGACTCCGATGCATCATCCATAGCTTCCCTCAACAACCTATCAAGCAACACCAAGCACATTCCTTCTAATCAAATCGTTGTTGTTCCAATTGATTGTTCCTGTTTGGGTGTTATCTACCAGCATCCCGTTTCTTATGCGGTGCAGAAAGGTGACACCTACTATGAGTTGACCGTATTTTCTTATCAAAACCTCTCCATTTGCCAGATGATAGTCCGGCAAAATTACGGATTTGACGCCCTCAACCTCACTATTGGTGATGAAATTTCAGTTCCCGTCTTATGCGCTTGCCCCACCACTGACCAGATCGCAGATGGGGTTTACTCCCTGCTGGTTCTCCCGGTTAACCCTGGGGATTCACTCGAGTCAATCGCAGAGGACTATGGTACGAATCCACAGACTCTGATGACTGCTAACCAGTTGCATTCGAACACTACTATCAATATCTCCACAACTCTCTTAGTTCCCCTCAAACCCTCCTCTTGTAAACTCAATCCGCATTTATTCTACTGCACCTGCTCATTCTCCGAGAAATACGATCCAGATTCAAGTTCCAACACTCTCAATTGTGATCATATTCAACCTGATCCTGATCCTGATCCTGATCGTTTCCCCGTCAAATTGGTTGCTTCCCTAGGTGTTGGCGTTGGTGTTGGCCTGCTAAGCTTATTTCTGTTGGGTCGCAAGTTATATCAATGCCTAAAACAAAAGCAAGAAAGAGCTCGCAAGGAAAAATTGTTCAAGCAAAATGGGGGCCTCCTACTGCAAGAAAAGATGTCATCTTACGAAAATGGAGACAGAGCAAGACTTTTTACGGCAGAAGAGTTGGAACGAGCAACAGATAACTACAACCGAAGTAGGTTTCTTGGTCAAGGTGGGTTTGGAACTGTTTATAAGGGAATGTTACCAGAAGGTACCATTGTTGCAGTCAAGAAGGCGAAAGAAATTGTGAGAAGCCAAATTGAGACTTTCATTAATGAAGTGGTGATTCTATCCCAAATAAACCATAGGAACATCGTCAAACTATTGGGGTGGTGCCTAGAGACTGAAGCGCCATTATTAGTATATGAATTTATTCCCAGTGGAGCACTTTCTCACCACATCCATAACCAGGAACTTGAAGGAAAGCTTTCATGGGACATCCGCCTCAGAATTGCTTGTGAGGTTGCTGGGGCAGTGGCCTATATGCATTCTGCGGCTTCCATTCCTGTCTTTCATAGAGACATCAAGACTTCCAACATACTCCTGGATCACAAGTACAGTGCCAAAATATCTGATTTTGGGACTTCAAGATCAGTCCCAAATGATAGGACTCACTTAACCACAGTGGTACAAGGCACTTTTGGATACCTTGATCCTGAATACTTCCAGTCCAGTCAATTTACAGATAAAAGTGATGTATACAGTTTCGGGGTTGTACTTATAGAGCTCATTACTGGAAGGAAACCGATTACCTTCTCTGAAGAAGATCAAGGTCAGAACCTTGTCTCAGAATTTATTGCTTTGATGAAGAAGGACCAAGTTTTTGAGATTTTAGATGCCAGAGTTGTGCATGAAGCAAGGAAAGATGATATTCTTAGTATTGTGAATCTAGCAAAGAGATGTGTGAAGCTCAATGGGAAGAAGAGACCCACAATGCGAGAGGTTTCAGCAGAGCTAGAAGGAGTGAGAAAAACACAAAATTCTTTACAGATCACTCGTTGTTCTCTTGAGTTTCCACAAGATAAAAAATCAGCTATGCATGCAACTCCTGATTCAGACCAAGAATCCACAGAAGAAAGCATGTCACTAATGTTCCAAATAGACTCCACGCCCATCTGA 2040 0.4319 MKLPSFHILLLLFVLSQSLHCCCQPDPVTDAQCTFNETTKLGYKCNGFQNSCTSYVAYRSNPRYNTALTIANLLDSDASSIASLNNLSSNTKHIPSNQIVVVPIDCSCLGVIYQHPVSYAVQKGDTYYELTVFSYQNLSICQMIVRQNYGFDALNLTIGDEISVPVLCACPTTDQIADGVYSLLVLPVNPGDSLESIAEDYGTNPQTLMTANQLHSNTTINISTTLLVPLKPSSCKLNPHLFYCTCSFSEKYDPDSSSNTLNCDHIQPDPDPDPDRFPVKLVASLGVGVGVGLLSLFLLGRKLYQCLKQKQERARKEKLFKQNGGLLLQEKMSSYENGDRARLFTAEELERATDNYNRSRFLGQGGFGTVYKGMLPEGTIVAVKKAKEIVRSQIETFINEVVILSQINHRNIVKLLGWCLETEAPLLVYEFIPSGALSHHIHNQELEGKLSWDIRLRIACEVAGAVAYMHSAASIPVFHRDIKTSNILLDHKYSAKISDFGTSRSVPNDRTHLTTVVQGTFGYLDPEYFQSSQFTDKSDVYSFGVVLIELITGRKPITFSEEDQGQNLVSEFIALMKKDQVFEILDARVVHEARKDDILSIVNLAKRCVKLNGKKRPTMREVSAELEGVRKTQNSLQITRCSLEFPQDKKSAMHATPDSDQESTEESMSLMFQIDSTPI 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5537g00008 679 SMART serkin_6 356 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5537g00008 679 SUPERFAMILY LysM domain 186 229 IPR036779 -
Pral5537g00008 679 ProSitePatterns Protein kinases ATP-binding region signature. 362 385 IPR017441 GO:0005524
Pral5537g00008 679 ProSiteProfiles LysM domain profile. 184 228 IPR018392 -
Pral5537g00008 679 SUPERFAMILY Protein kinase-like (PK-like) 335 626 IPR011009 -
Pral5537g00008 679 Gene3D LysM domain 184 237 IPR036779 -
Pral5537g00008 679 Gene3D Transferase(Phosphotransferase) domain 1 432 648 - -
Pral5537g00008 679 MobiDBLite consensus disorder prediction 647 667 - -
Pral5537g00008 679 CDD STKc_IRAK 362 628 - -
Pral5537g00008 679 ProSiteProfiles Protein kinase domain profile. 356 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5537g00008 679 Gene3D Phosphorylase Kinase; domain 1 328 431 - -
Pral5537g00008 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Pral5537g00008 679 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 117 633 IPR045274 GO:0007166
Pral5537g00008 679 FunFam Wall-associated receptor kinase 2 432 647 - -
Pral5537g00008 679 FunFam Wall-associated receptor kinase 2 326 431 - -
Pral5537g00008 679 Pfam LysM domain 188 229 IPR018392 -
Pral5537g00008 679 SMART LysM_2 185 229 IPR018392 -
Pral5537g00008 679 SMART LysM_2 118 165 IPR018392 -
Pral5537g00008 679 CDD LysM 188 228 IPR018392 -
Pral5537g00008 679 Pfam Protein kinase domain 356 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5537g00008 Pral-Chr5537 65044 68822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5537g00008 286 633 Receptor kinase-like Gene Family AT1G16130 54.857 5.39e-133 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Pral5537g00008 Pkinase 9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5537g00008 - - gmx:100795455 735.332