Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5537g00005 ATGCTTTGTTTGTCCGTACGGTTCTACGTCAACGACGCCTTGCTCTTCCTTCTCCCTCCCTCTCTCATTCATGGCTTCGCAAGGGAAGTTCTAACCCTGAGAGGTTTTAGATTCGCTTTCTTGTTCCTTTATGGTTTCTATGCTAAGAATGTGACGTTTAGTACTATCGACGTTCTTGATCATAGAATCCTAGTTCTGATTCTCGGTGGAAATGCTCACTTTTCCCATCCATTTGAATCTATGCAAGGCTTTGTCTTTGGAGTGGGTGTGGCAGCTGCATTACTGTGCTGCTTCTGGTGCCAAAATAAGCATACACAAGTAGGGAGAAGCTCTGAGAAATTAGGAAACATTCCCTTTCGTATCAAAGTAGTGGATCCTGGGGCATCAGTGTCAAGCTCAAATGTGGGGCAGGAGTCACCCGTATCATCTGACTGGAGTAACATGCCTCTTTGGTTGGAAGGACTTAAGAGGAAGGATGTTGGTTCTGCATGCGGAATTCCAAAGTATTCTTACAAAGATATGCAGAGGGCAACTTCTAATTTCACAACCATCATAGGTCGTGGTGCATTTGGTTCAGTTTACAAAGCTCAGATGCTCGCTGGTGAAACAATTGCTGTTAAAGTTCTTGGTAACAATTCAAGACATGGAGAGAAAGAGTTTTTGACCGAGGTCTTGTTACTTGGAAGATTACACCACAAACGTCTTGTGGATTTAGTGGGATATACTGCCGAGAGAGGACATCATATGCTCCTTTTTGCGTACATGAGTAATGGCAACCTCGCCTCTCACTTATATGGCAAAAATCAGGAGCCATTAAACTGGGATGCAAGATTTCAGATAGCACTAGATGTTGCGAGGGGACTGGAATATCTACATTATGGGGCTTCTCCCCCTGTTGTGCACCGTGACATTAAATCTTCCAACATATTGCTGGACCAGTTTATGAGAGCGAAGGTAACTGACTTTGGGCTTTCTAGACCAGAGATGATTAAACGTCGTTCATCTAATATCAAAGGAACTTTTGGCTATCTTGATCCTGAATACATGTCTACAAAAACCTTTACCAAGAAGAGTGATGTTTATAGTTTTGGTGTGCTACTCTTTGAATTGATTACTGGCAGGAATCCACAGCAAGGCCTGATGGAATATGTGAAACTAGCAGCCATGGAAGCCGAGAGTAAGGTTGGGTGGGAAGAAATTGTGGATTCACAGCTTAATGGAAAATATGATGTGCATACGCTTAATGATATGGCTGCTCTTGCTTTGAAATGTGTCAATGAAGCATCCAGAGATCGGCCTTCCATGAGGGACATCGTTGGAGCATTATCCCAGCTCTGTAAGAAGAAGCATGGTGGAAATAGTAATATGAAGTCTCCTGCAGTGAATGAAGTTTCCATTGAAATGGATGAAGTTTTCATCCACAGAGCACTCAAATGTGATGCGCAAATTGCATAG 1455 0.4296 MLCLSVRFYVNDALLFLLPPSLIHGFAREVLTLRGFRFAFLFLYGFYAKNVTFSTIDVLDHRILVLILGGNAHFSHPFESMQGFVFGVGVAAALLCCFWCQNKHTQVGRSSEKLGNIPFRIKVVDPGASVSSSNVGQESPVSSDWSNMPLWLEGLKRKDVGSACGIPKYSYKDMQRATSNFTTIIGRGAFGSVYKAQMLAGETIAVKVLGNNSRHGEKEFLTEVLLLGRLHHKRLVDLVGYTAERGHHMLLFAYMSNGNLASHLYGKNQEPLNWDARFQIALDVARGLEYLHYGASPPVVHRDIKSSNILLDQFMRAKVTDFGLSRPEMIKRRSSNIKGTFGYLDPEYMSTKTFTKKSDVYSFGVLLFELITGRNPQQGLMEYVKLAAMEAESKVGWEEIVDSQLNGKYDVHTLNDMAALALKCVNEASRDRPSMRDIVGALSQLCKKKHGGNSNMKSPAVNEVSIEMDEVFIHRALKCDAQIA 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5537g00005 484 Gene3D Transferase(Phosphotransferase) domain 1 255 469 - -
Pral5537g00005 484 ProSitePatterns Protein kinases ATP-binding region signature. 185 207 IPR017441 GO:0005524
Pral5537g00005 484 SUPERFAMILY Protein kinase-like (PK-like) 165 442 IPR011009 -
Pral5537g00005 484 PANTHER OS01G0750732 PROTEIN 83 452 - -
Pral5537g00005 484 Gene3D Phosphorylase Kinase; domain 1 163 254 - -
Pral5537g00005 484 SMART serkin_6 179 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5537g00005 484 ProSiteProfiles Protein kinase domain profile. 179 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5537g00005 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 299 311 IPR008271 GO:0004672|GO:0006468
Pral5537g00005 484 Pfam Protein tyrosine and serine/threonine kinase 181 441 IPR001245 GO:0004672|GO:0006468
Pral5537g00005 484 FunFam calcium/calmodulin-regulated receptor-like kinase 1 255 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5537g00005 Pral-Chr5537 41773 47069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5537g00005 168 469 Receptor kinase-like Gene Family AT1G49100 41.905 4.90e-72 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Pral5537g00005 PK_Tyr_Ser-Thr 2.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5537g00005 - - gmx:100816549 541.576