Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5535g00018 ATGTTTACTCACAGATACTTCTTACTCTTCTTCTTCTTTATCGCTAGCTTCCTCTGTTCTCCTACCATTGAAGCAGTACGACCTACTTATCTTTACCACAACTGCTCCACCGCCGGAAAAAGCTTCTCTGCTAATAGTACCTTCCAATCCCACCGGACCACCCTCCTCTCCTCCTTAGCTTCAGCCAATGCCGCCTTCTACAACAGCAGCGTTCCTGGAGGCAGTGAAGCCATCTACGGCCTCTTCATGTGCCGGGCCGACGTCTCCCTCCAGGTCTGCCGCGAATGCGTCGCTAACGCAACCCAACTGCTACCTTCTGAGTGCCGGTTTTCGAAGGAGGCCGTAATCTGGTACGACGAGTGCATGCTTCGCTATTCCAACACCTCTTTCTTCTCCACCATTGATAAATGGCCAACCGTCGTCATATTGAACCCGAACAATATCTCCAACTCGTACCAGGCAAGATTCAAGAGTTTCTTGCTGGATTTTATGAATGACACGGCAAGTATGGTGGCGGTGGCGAAATCTGTGTCGGAGGAAAAGGCGTATGCGAAGAACCAAGCTAATTTTCAGTCTCAAACTGTGTACAGTCTAGCTCAGTGCACGCCGGATCTACGGCTTGAAGATTGCAGAAGTTGTTTGAGTGGTGTGATTCGGAGCATTCCGTTGTGTAGTGAGGGGAAGATCGGAGGAAGAGCTGTGAATCCCAGCTGCAACATTCGCTATGAAATGTCGTCGGCACTGGCCCGGGCTCATCCTCGACCTCCAGCAAGGACAATTGTGATAATTGTGGCTTCTCTTTTTGTTGGCGGGTCAATTTTTTATTCGGCTTACTATCTCTTAAAGATTCGAATGAAGAAGAGTCATAGGGCTATTCTCAGACAAAAGTACTTTGGAAGGGAAAGCACAACTTTAGAGCATCTGCAATTTAATCTAGCTACAATTGAGGCTGCGACAAATAAGTTTTCTCGGGAAAATAGTTTAGGCAGAGGTGGATTTGGACAAGTTTTCAAGGGTGTTCTTTCAAATGGTCAAGAAATAGCTGTGAAGAGACTTTCAAAACGTTCTGGTCAAGGTGCCGAGGAGTTTAAGAACGAGGTCTTATTAATAGCTAGACTCCAGCACAGATATTTGGTGGCGTTATTAGGATTTTGTATTGAGGAGCAAGAGAAAATACTTGTTTATGAATATGTTCCCAACAGAAGCCTTGATTATTTTTTATTTGGTTCCCAAAACAGCAGGGTATTAGATTGGATGGAGCGTAGTAAAATCATAGGAGGAGTTGCTCGAGGAATTCTTTATCTTCATGAATATTCTCGCTTGAAAATCATACATCGAGATCTCAAACCTAGCAATATTTTGTTGGATGATGAAATGAATCCAAAAATTTCAGATTTTGGCCTAGCTAGGATAGTTGCTATTAGTGAAAATGAAGGAAGTACAAATCGAATTGTTGGAACATATGGTTACATGTCTCCAGAGTATGCAATGTTCGGACAATATTCTGAAAAATCAGATGTTTTTAGTTTTGGAGTTATAGTTTTAGAAATTATTAGTGGAAAGAAGAACACCGGTTGTCATGATTCACAATACGCCGATGGCCTCTTAAGCTATACTTGGAAGCAATGGAGGGACGACAAGTTGCTAGAGATACTGGATTCAGATATAAATGAATTGGGATCATACAATGAAGTGATCAAGTGCATTCAAATTGGTTTATTATGTGTTCAAGAAAATCCAAATACAAGGCCTTCCATGGCTACAGTTGTTTCATATCTTAGCAATGATTCTATTCAATTGCCATCACCACAGGAACCTGCTTTCTTTTTGCATGGCCAACCAGAGCCTATTATCACCAGTGCAAGTGGAGAATCATGCTCTATTAATGAAGCTTCTATAAGTGAATTCACCCCTCGCTAA 1920 0.4271 MFTHRYFLLFFFFIASFLCSPTIEAVRPTYLYHNCSTAGKSFSANSTFQSHRTTLLSSLASANAAFYNSSVPGGSEAIYGLFMCRADVSLQVCRECVANATQLLPSECRFSKEAVIWYDECMLRYSNTSFFSTIDKWPTVVILNPNNISNSYQARFKSFLLDFMNDTASMVAVAKSVSEEKAYAKNQANFQSQTVYSLAQCTPDLRLEDCRSCLSGVIRSIPLCSEGKIGGRAVNPSCNIRYEMSSALARAHPRPPARTIVIIVASLFVGGSIFYSAYYLLKIRMKKSHRAILRQKYFGRESTTLEHLQFNLATIEAATNKFSRENSLGRGGFGQVFKGVLSNGQEIAVKRLSKRSGQGAEEFKNEVLLIARLQHRYLVALLGFCIEEQEKILVYEYVPNRSLDYFLFGSQNSRVLDWMERSKIIGGVARGILYLHEYSRLKIIHRDLKPSNILLDDEMNPKISDFGLARIVAISENEGSTNRIVGTYGYMSPEYAMFGQYSEKSDVFSFGVIVLEIISGKKNTGCHDSQYADGLLSYTWKQWRDDKLLEILDSDINELGSYNEVIKCIQIGLLCVQENPNTRPSMATVVSYLSNDSIQLPSPQEPAFFLHGQPEPIITSASGESCSINEASISEFTPR 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5535g00018 639 FunFam Cysteine-rich receptor-like protein kinase 10 138 246 - -
Pral5535g00018 639 Gene3D Phosphorylase Kinase; domain 1 283 397 - -
Pral5535g00018 639 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 283 397 - -
Pral5535g00018 639 Pfam Salt stress response/antifungal 153 243 IPR002902 -
Pral5535g00018 639 Pfam Salt stress response/antifungal 35 127 IPR002902 -
Pral5535g00018 639 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 28 129 - -
Pral5535g00018 639 Gene3D - 139 246 IPR038408 -
Pral5535g00018 639 Gene3D - 27 130 IPR038408 -
Pral5535g00018 639 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 47 622 - -
Pral5535g00018 639 CDD STKc_IRAK 328 593 - -
Pral5535g00018 639 SMART serkin_6 322 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5535g00018 639 ProSiteProfiles Gnk2-homologous domain profile. 30 130 IPR002902 -
Pral5535g00018 639 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Pral5535g00018 639 Gene3D Transferase(Phosphotransferase) domain 1 398 601 - -
Pral5535g00018 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Pral5535g00018 639 FunFam cysteine-rich receptor-like protein kinase 10 398 600 - -
Pral5535g00018 639 Pfam Protein kinase domain 323 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5535g00018 639 ProSiteProfiles Protein kinase domain profile. 322 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5535g00018 639 SUPERFAMILY Protein kinase-like (PK-like) 305 620 IPR011009 -
Pral5535g00018 639 ProSiteProfiles Gnk2-homologous domain profile. 136 247 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5535g00018 Pral-Chr5535 344183 348484 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5535g00018 7 639 Receptor kinase-like Gene Family AT4G05200 43.935 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral5535g00018 Pkinase 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5535g00018 - - pcin:129286093 794.653