Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5520g00075 ATGTTGCAGGATCGTCTCCAGGAGATGTATGAAAACTTGTGTGGCCATTCATTTATTAACTGTTTGCTGCTATTCTTTATGTTTTCTACTTTCCTTCCGAATGCTCAAGCTGGAGACCCCGAACGGATCCATTTGAGCACAGAGATGACACTAGTGATGCTCTCCATTATGTTTACGATAATACTTGGGCTGATTGCTTATATAAAATTCTGTGGAACCAGTTCTTCTGAGCTTCTGAACCAAAGCGTCCATCCCCAGAGCTTGGCTCGATCGGAGCAGTCCAGATTTTATGGGATCGACAAGCAAGTAATCGAAGCACTTCCTGTGTTCGAGTTTTCTTTCCTCAAGGGATCAAAAGAAGGCCTCGAATGCGTGGTTTGCCTGTCGAGATTTGAAAACAGGGAAACACTTAGGTTGCTCCCAAAGTGCAAGCATGCTTTCCACATGAATTGCATAGACATGTGGCTTGAAGGTCACTCTACCTGCCCGCTCTGTAGATGCAGGGTAGATCCAGGGGATGTCAAGGGCTTCACTTCTTCAATCAGCTCAAGGTTCCTGAGTGTCCCTTCCAATTTAACAGAGGAACCAAATCTCGAAATCCTTGTGCAGAGGGAGCAATCCCGTCAAGAGTCATTGAGAATCAACTATGGGAGAGGCTTATGGAATGTGGAGGAGGGCAGGAAGGAAGAAGAACTACTCATTGATAATGGTGGAAATCGGGAAATTCTGCACAAGTTCCATCATAGGATAGTTATCTCAGGTTTTGTTATGAGGAGTAGGTGGAGTGATCTTACTGCGACGGATTTGCTACTCTTAAACTCGGAAATGCTCAGTGTTATGTCGAACAGAAGATTCCTTGCTTCAGAATCCGCCAACGGTGAATCCTCACGATGGGATTCAAACCTTTCAGGTACTTCCAACGAGGAACAACACACGTACCAGCCACTGAATTGGGGTCGTAAAAGATCATTGTCTGAGATTACAATTGTTCCGAGGTTGAAGGAAATCAACAGGATGAAAAAATTAGCAGCATCGGGCGACAACAATGGGGGTGAAGAGAGATCATGGAGGATATGGTGGCCGATCGCGAGGCGAACCGTGCTAGGGTTTGCCAGACGAGAAAGAAGTTCCACGGAGTTAGAATCGAAACAATTAGGTTCAAGTGTGTAA 1170 0.4538 MLQDRLQEMYENLCGHSFINCLLLFFMFSTFLPNAQAGDPERIHLSTEMTLVMLSIMFTIILGLIAYIKFCGTSSSELLNQSVHPQSLARSEQSRFYGIDKQVIEALPVFEFSFLKGSKEGLECVVCLSRFENRETLRLLPKCKHAFHMNCIDMWLEGHSTCPLCRCRVDPGDVKGFTSSISSRFLSVPSNLTEEPNLEILVQREQSRQESLRINYGRGLWNVEEGRKEEELLIDNGGNREILHKFHHRIVISGFVMRSRWSDLTATDLLLLNSEMLSVMSNRRFLASESANGESSRWDSNLSGTSNEEQHTYQPLNWGRKRSLSEITIVPRLKEINRMKKLAASGDNNGGEERSWRIWWPIARRTVLGFARRERSSTELESKQLGSSV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5520g00075 389 FunFam RING-H2 finger protein ATL43 99 173 - -
Pral5520g00075 389 SUPERFAMILY RING/U-box 119 171 - -
Pral5520g00075 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 172 IPR013083 -
Pral5520g00075 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 44 374 - -
Pral5520g00075 389 Pfam Ring finger domain 123 166 IPR001841 -
Pral5520g00075 389 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Pral5520g00075 389 MobiDBLite consensus disorder prediction 293 315 - -
Pral5520g00075 389 CDD RING-H2_EL5-like 123 166 - -
Pral5520g00075 389 SMART ring_2 124 165 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5520g00075 Pral-Chr5520 349311 350480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5520g00075 34 377 C3H Transcription Factor Family AT2G20030 37.802 6.25e-64 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5520g00075 K10664 - gmx:100803881 328.946