Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5520g00071 ATGGAAGCACCCGAGTATTTCCGGGGCGGCTTTTGCTCCCAATTCACGTCCTCCGATGCCAAGACCGACCATTTCATCGTGGAGGACCTCCTCGACTTCCCCCACGACGACGACGCTCTCATCACCGACCCTGCCTTCGACTCTCTTCCCACCGATTCTTCCATTCTAATTAACTCCGTCGATACCTCCAATTCCTCTTCATTCTCCGGCTGCGACCCCAATTTCAACCCTCACATTTCCTCTCGAAATTTGCCCGACCCATATTTCTCCAGCGACCTCTGCGTCCCGAGCGATGATATGGCAGAGCTGGAATGGCTCTCGAACATTGGGGAGGAATCATTTTCGAGCGAGGACCTGCAGAAACTGGAGCTGATATCGGGCATAAAAGCCCGAAACGAGGAAGCATCAGAAAGCCGCGAGTTGCAGCACCCCGAGGAAACAAACCGTAACAACGTCATGCTCAACCGCCAAGTGTCGGTTCCGGCGAAGGCTCGCAGCAAGAGATCCCGCGGGCCACCATGCAACTGGACCTCTCGCCTCCTCGCCCTTTCTCCCACATCATCGTCTTCCGAACCCGACATCGTCCTTCCCACCCAGCCGGGAAAGTCGGTGACAAGGAGAAAGGAGAACGGCGACGAAGGGTCCGGGGAGGGACGGAAATGCCTGCATTGCGCGACGGATAAGACGCCGCAGTGGAGGACGGGGCCCATGGGCCCGAAGACGCTGTGCAATGCTTGTGGGGTAAGGTACAAGTCGGGGAGGTTGGTGCCGGAGTACAGGCCGGCGGCGAGCCCGACGTTCGTGCTGACGAAGCACTCGAACTCACACCGGAAGGTGCTAGAGCTCCGAAGACAGAAGGAGATGATGAGGGCCCAGCAGCAGCAGCAGCAGCGGTTTCTCCAACATCAAAACATGATGTTCGATGTGTCCAACGGCGACGATTACTTGATCCACCAAGACGTGGGCCCAGATATCAGGCAGCTCATCTAG 990 0.5737 MEAPEYFRGGFCSQFTSSDAKTDHFIVEDLLDFPHDDDALITDPAFDSLPTDSSILINSVDTSNSSSFSGCDPNFNPHISSRNLPDPYFSSDLCVPSDDMAELEWLSNIGEESFSSEDLQKLELISGIKARNEEASESRELQHPEETNRNNVMLNRQVSVPAKARSKRSRGPPCNWTSRLLALSPTSSSSEPDIVLPTQPGKSVTRRKENGDEGSGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMMRAQQQQQQRFLQHQNMMFDVSNGDDYLIHQDVGPDIRQLI 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5520g00071 329 PANTHER GATA TRANSCRIPTION FACTOR 17 297 - -
Pral5520g00071 329 MobiDBLite consensus disorder prediction 179 196 - -
Pral5520g00071 329 Gene3D - 212 300 IPR013088 GO:0006355|GO:0008270
Pral5520g00071 329 CDD ZnF_GATA 220 267 IPR000679 GO:0006355|GO:0043565
Pral5520g00071 329 ProSitePatterns GATA-type zinc finger domain. 221 246 IPR000679 GO:0006355|GO:0043565
Pral5520g00071 329 Pfam GATA zinc finger 221 254 IPR000679 GO:0006355|GO:0043565
Pral5520g00071 329 PIRSF Txn_fac_GATA_plant 11 311 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pral5520g00071 329 ProSiteProfiles GATA-type zinc finger domain profile. 215 251 IPR000679 GO:0006355|GO:0043565
Pral5520g00071 329 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 279 - -
Pral5520g00071 329 FunFam GATA transcription factor 211 298 - -
Pral5520g00071 329 SMART GATA_3 215 265 IPR000679 GO:0006355|GO:0043565
Pral5520g00071 329 MobiDBLite consensus disorder prediction 133 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5520g00071 Pral-Chr5520 306104 307804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5520g00071 22 329 C2C2-Gata Transcription Factor Family AT5G25830 52.226 1.26e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral5520g00071 GATA 3e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5520g00071 - - qsa:O6P43_015488 457.988