Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5520g00070 ATGATGGCGGTGAGCTCGGCCTGCAAAGATGGGAGCAAGATGGGAATGGATAACGGCAAGTACGTGCGGTACACACCTGAGCAGGTGGAGGCTCTGGAGAGGCTATATCACGAATGCCCCAAACCCAGTTCCATCCGCCGTCAGCAGCTTATCAGAGAGTGTCCCATTCTCTCTAACATCGAGCCCAAACAGATCAAGGTTTGGTTCCAGAACCGAAGATGCAGAGAGAAGCAGCGAAAAGAAGCTTCACGCCTGCAAGCCGTAAACAGAAAACTGACGGCTATGAATAAACTGCTGATGGAGGAAAACGACAGATTGCAGAAACAGGTGTCACAGCTGGTTTACGAGAACAGCTTTTTCCGCCAACAGACTCAGAATGCGACTCTTGCAACCACGGACACGAGTTGCGAGTCGGTGGTGACGAGCGGGCAGCACCATTTGACGCCTCAGCATCCACCAAGGGATGCTAGCCCAGCTGGACTTTTGTCCATTGCAGAGGAGACTCTTGCAGAGTTTCTTTCGAAGGCCACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGAGTGGCAGCCCGTGCGTGCGGCCTTGTGGGTCTGGAACCTACGAGGGTTGCTGAAATCCTCAAAGATCGGCCCTCATGGTGCCGTGATTGCCGAGCTGTGGATGTTCTAAACGCGATGCCCACTGGAAATGGGGGAACCATTGAACTGCTTTACATGCAGTTGTATGCCCCAACAACTTTGGCGCCAGCTCGTGACTTCTGGCTGCTGCGTTACACTTCGGTTTTGGAGGATGGTAGTCTTGTGGTCTGTGAAAGATCGCTTAACAATACTCAGAATGGTCCTACTATGCCCCCAGCGCAGCATTTTGTGAGAGCAGACATGCTGCCAAGCGGGTATCTGATCAGACCTTGTGAAGGAGGTGGATCCATCATTCATATTGTTGATCACGTCAACTTAGAGCCTTGGAGTGTACCTGAAGTGTTACGCCCACTATACGAGTCATCAACGTTGCTTGCTCAAAAGACAGCAATGGCGGCTTTACGTCATTTGAGGCAAATCTCTCAAGAAGTTTCTCAGCCAAACGTCACCGGATGGGGAAGAAGGCCTGCAGCTTTGCGAGCACTGAGTCAGCGTTTGAGCAGGGGCTTCAATGAAGCTGTCAATGGATTTGCAGACGATGGCTGGTCCGTGTTAGAAAGTGATGGCATTGATGATGTCACCCTTCTTGTGAATTCATCTCCTAGCAAGACAATGGGGGTAAATATTGGTTATAACAATGGGTTTCTTTCGATGAGCAGTTCCGTGCTATGTGCAAAGGCATCCATGTTGTTACAGAATGTCCCTCCTGCAATTCTTCTTAGATTCTTGCGGGAGCATCGATCAGAGTGGGCAGATAGCAATATTGATGCTTACTCAGCCGCTGCCATCAAAGCTGGTCCCTGCACCTTGCCTGGGATTCGAACAGGAGGTTTTGGTGGTCAGGTTATTCTTCCACTGGCGCACACAATTGAGAACGAAGAGTTTATGGAGGTCATCAAGCTTGAAAATATGGGATACTATAGAGAAGACATGACCATTCCGGGCGATATTTTCCTTTTGCAACTTTGTAGCGGAGTAGATGAGCGTGCTGTTGGCACCTGTGCAGAGCTCATTTTTGCTCCCATTGATGCATCTTTCTCTGATGATGCACCCATTTTACCTTCTGGTTTCCGCATCATACCTCTTGATTCAGGCATGGATGCTGCTACTCCAAACCGAACACTTGATCTTGCTTCTGCTCTTGAGGTTGGAACCACTGGAAACAAATCAGCTGGCGATAATTTAGGTCAATCCGGGAGCACGAAATCTGTGATGACAATAGCATTTCAGTTTGCATTTGAAGTCCATCTTCAAGATAGTGTAGCAGCTATGGCTCGGCAGTATGTTCGAAGTATTATTGCATCTGTTCAGAGGGTAGCATTGGCACTATCCCCTTCCCACTTTGGTTCCCAAAATGGTCTTCGCCCACCACCTGGCACTCCTGAGGCACAAACACTTGCCCAATGGATCTGTAATAGCCATAGGAGCTATCTAGGGGTAGAACTACTAAAATGTGAAGGCAGTGAATCCATTCTCAATTCCCTTTGGCATCACTCTGATGCAGTCTTGTGCTGCTCTTTAAAGGCTTTGCCGGTTTTTACATTTGCAAATCAAGCGGGACTTGACATGCTTGAGACAACTTTGGTTGCTCTTCAAGACATCACTCTTGATAAGATTTTTGACGAGAATGGGAAGAAAACCCTATTCTCTGAGTTCCCCCAGATAATGCAGCAGGGCTTTATGTGCATGCAAGGAGGCATCTGCTTGTCGAGCATGGGAAGGCCAGTGTCTTATGAGAGGGCGGTGGCATGGAAAGTATTGAACGAAGAAGAAACAGCCCATTGCATTTGTTTCATGTTCATCAACTGGTCATTTGTCTGA 2520 0.4869 MMAVSSACKDGSKMGMDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENSFFRQQTQNATLATTDTSCESVVTSGQHHLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDRPSWCRDCRAVDVLNAMPTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPTMPPAQHFVRADMLPSGYLIRPCEGGGSIIHIVDHVNLEPWSVPEVLRPLYESSTLLAQKTAMAALRHLRQISQEVSQPNVTGWGRRPAALRALSQRLSRGFNEAVNGFADDGWSVLESDGIDDVTLLVNSSPSKTMGVNIGYNNGFLSMSSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSNIDAYSAAAIKAGPCTLPGIRTGGFGGQVILPLAHTIENEEFMEVIKLENMGYYREDMTIPGDIFLLQLCSGVDERAVGTCAELIFAPIDASFSDDAPILPSGFRIIPLDSGMDAATPNRTLDLASALEVGTTGNKSAGDNLGQSGSTKSVMTIAFQFAFEVHLQDSVAAMARQYVRSIIASVQRVALALSPSHFGSQNGLRPPPGTPEAQTLAQWICNSHRSYLGVELLKCEGSESILNSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLDKIFDENGKKTLFSEFPQIMQQGFMCMQGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFINWSFV 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5520g00070 839 CDD bZIP 72 111 - -
Pral5520g00070 839 Coils Coil 75 116 - -
Pral5520g00070 839 SMART HOX_1 17 83 IPR001356 GO:0003677
Pral5520g00070 839 FunFam Homeobox-leucine zipper protein REVOLUTA 20 75 - -
Pral5520g00070 839 Pfam START domain 164 372 IPR002913 GO:0008289
Pral5520g00070 839 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Pral5520g00070 839 FunFam homeobox-leucine zipper protein ATHB-15 199 380 - -
Pral5520g00070 839 Gene3D - 12 86 - -
Pral5520g00070 839 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 16 839 IPR044830 GO:0003700
Pral5520g00070 839 Gene3D - 198 378 IPR023393 -
Pral5520g00070 839 SMART START_1 163 373 IPR002913 GO:0008289
Pral5520g00070 839 Pfam MEKHLA domain 698 838 IPR013978 -
Pral5520g00070 839 CDD START_ArGLABRA2_like 158 373 - -
Pral5520g00070 839 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289
Pral5520g00070 839 CDD homeodomain 20 80 IPR001356 GO:0003677
Pral5520g00070 839 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Pral5520g00070 839 SUPERFAMILY Bet v1-like 163 375 - -
Pral5520g00070 839 SUPERFAMILY Homeodomain-like 18 83 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5520g00070 Pral-Chr5520 292453 299531 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5520g00070 16 839 Homeobox Transcription Factor Family AT4G32880 81.763 0.0 1418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral5520g00070 START 4.1e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5520g00070 K09338 - gmx:100815727 1535.01