Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5519g00001 ATGTCTGCGCCGCTGCTCGGCATAGGCGAGGAAGAAGGTAAAACCAATGCTACTTTGCTGGTTTCCTCAACTGCGGCTGAAAATGGACTCCTCAATGCCACAGAGTTAAAAGAACGCAACTATATGGGATTATCTGATTCTTCTTCTGTGGACAGCTCAGTCCTGTCCTTCTCAGATGAGACTAAAAGTAACCTAAACCTAAAAGCCACAGAGCTGAGGCTTGGCCTTCCAGGATCTCAGTCTCCTGACCGGGACTCAGATCTCTGCTTGAGAAGCTCAGCTCAGCTGAATGAGAAACCCTTGTTTCCATTGCGCCCATTGACTGATGATCACCACTCTTCAACAAAGACTGCTGTTTTGGGCAGCAAGAGAGGGTTCTCAGATGCCATGAATGGTTTCTCAGAGGCAAAATTTCTTGCTGATTCAGAGGCCAATAATGTACTGTCCCCCAGGCCTTCTCATAACATGGGATTGAAAACTAGTGGTGTGCTTGAGAATCTCGGGGCTCAAGCCAAAGCCAAAGAAGTAACACCAACAAAGGCAAAACTTGAGAGGCCTCATTCTGTCAAGGAAACTAGAGCAAACCTCGAAGGTTCTGCCAATAACAATAGCAATGCACCAGCTACCAAGGCCCAAGTTGTGGGTTGGCCTCCTATAAGATCATTCAGGAAGAATTCACTGGCTACTACTTCAAAGAATACTGAAGAAGGAGATGGAAAAGCAGGATCTGGTGCGCTGTTCATCAAAGTCAGTATGGATGGTGCTCCATATTTAAGGAAGGTAGATTTGAAGAACTACTCCGCATATCCAGAACTTTCATCTGCACTGGAGAAGATGTTCAGCTGTTTTACCATAGGTCAATATGGCTCTCATGGAACTCTAGGCAGGGAGATTTTAAATGAAAGCAAGCTGAAGGATCTGCTTCATGGGTCTGAATATGTTCTAACCTATGAGGACAAAGAGGGGGACTGGATGCTTGTGGGTGATGTTCCGTGGGAGATGTTCATTGATACATGCAGGAGGCTGAGGATCATGAAAAGTTCCGATGCCATTGGTCTTGCTCCAAGGGCTGTGGAAAAAAGCAAGAGTAGGAGCTAG 1098 0.4617 MSAPLLGIGEEEGKTNATLLVSSTAAENGLLNATELKERNYMGLSDSSSVDSSVLSFSDETKSNLNLKATELRLGLPGSQSPDRDSDLCLRSSAQLNEKPLFPLRPLTDDHHSSTKTAVLGSKRGFSDAMNGFSEAKFLADSEANNVLSPRPSHNMGLKTSGVLENLGAQAKAKEVTPTKAKLERPHSVKETRANLEGSANNNSNAPATKAQVVGWPPIRSFRKNSLATTSKNTEEGDGKAGSGALFIKVSMDGAPYLRKVDLKNYSAYPELSSALEKMFSCFTIGQYGSHGTLGREILNESKLKDLLHGSEYVLTYEDKEGDWMLVGDVPWEMFIDTCRRLRIMKSSDAIGLAPRAVEKSKSRS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5519g00001 365 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 65 352 IPR003311 GO:0005634|GO:0006355
Pral5519g00001 365 Gene3D - 240 359 - -
Pral5519g00001 365 Pfam AUX/IAA family 70 356 IPR033389 -
Pral5519g00001 365 SUPERFAMILY CAD & PB1 domains 243 346 - -
Pral5519g00001 365 MobiDBLite consensus disorder prediction 171 192 - -
Pral5519g00001 365 ProSiteProfiles PB1 domain profile. 245 347 IPR000270 GO:0005515
Pral5519g00001 365 MobiDBLite consensus disorder prediction 177 192 - -
Pral5519g00001 365 FunFam Auxin-responsive protein 240 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5519g00001 Pral-Chr5519 9417 13247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5519g00001 259 347 B3 DNA Binding Superfamily AT1G19220 33.708 1.03e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pral5519g00001 AUX_IAA 1.1e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5519g00001 K14484 - gmx:100815447 556.984