Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5518g00070 ATGGAGGTGTCTGGATATGATTTCTTGGAGGAATTACTAGCTCTAAGAAGAGAAGCATGGGACACAATTCCAAGTCCAAATGAAGAAAACCGGTTCTTCTTCCCCAGTGCTTATAATAGTTTGGACTGCTTTGATCCAAACTCTTTTGCTTTTCTCCCAAATTCTTTCTCTGATCAACAGCTACCTCAAAACTACAACAACCATAGTACCTTCAACGAAATCTACAGCTCATTACTTGATGAGTTCTCTGCACCCCAGATCATCGATTCGTCACCGCCCTACACCACTCTCGATACTACTACTTCACTTAGCCCCCCTTCTTTTCCGGTTCAAGAAGAGAATAACCCCTTCTCGTCCATGATGGAGGAAGAGGGTTTGTTTGGAGAAGAGTTTCAGAGTTTGGATCTTAAAAGGACATGTAAGAGAGAGCCTATCAGCCACTCTCCTGAAATGCCAGTTTTCAACATGGGCACCTGTAATTTGGAAGGAAAGAATCGACCCGCCAAGAAACTGCTGCGACAGCCTTCCAAGAATCTAATGGCTGAGAGGAGGAGAAGAAAGAGGCTAAATGATCGTCTCTCCATGCTAAGATCTATTGTCCCCAAGATTAGTAAGATGGATAGAACATCTATACTTGGGGACACGATAGACTACATGAAAGAACTTCTGGAGAAGATTAAAGATTTGCAGCAAGAAATAGACTTGGATTCAAACATGGTGGGCGTTTTGAAGGATGCGAGACCAAATGAAATCACAGCAAGAAATTCACCCAAGTTTGATGTGGAGAGAAGGAATGTGGACACGAGGGTTGAAATATGCTGTGCAGGGAAGCCAGGCTTGTTGCTATCTGCAGTGAACACCTTGGAAGCCTTCGGGCTTGAGATTCAGCAATGTGTTATCAGCTGCTTCAATGATTTCACGATGCAGGCTTCTTGCTCAGAGGAACTGGAGCACAGGACGATACTGGGTTCGGGAGATATAAAGCAAGCGTTATTTAGAAGCGCGGGATATGGAGGAAGATGTTTGTGA 1029 0.4412 MEVSGYDFLEELLALRREAWDTIPSPNEENRFFFPSAYNSLDCFDPNSFAFLPNSFSDQQLPQNYNNHSTFNEIYSSLLDEFSAPQIIDSSPPYTTLDTTTSLSPPSFPVQEENNPFSSMMEEEGLFGEEFQSLDLKRTCKREPISHSPEMPVFNMGTCNLEGKNRPAKKLLRQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKIKDLQQEIDLDSNMVGVLKDARPNEITARNSPKFDVERRNVDTRVEICCAGKPGLLLSAVNTLEAFGLEIQQCVISCFNDFTMQASCSEELEHRTILGSGDIKQALFRSAGYGGRCL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5518g00070 342 SMART finulus 179 228 IPR011598 GO:0046983
Pral5518g00070 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Pral5518g00070 342 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 76 336 - -
Pral5518g00070 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 235 IPR036638 GO:0046983
Pral5518g00070 342 Coils Coil 212 239 - -
Pral5518g00070 342 Gene3D - 168 238 IPR036638 GO:0046983
Pral5518g00070 342 Pfam Helix-loop-helix DNA-binding domain 179 222 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5518g00070 Pral-Chr5518 390449 392330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5518g00070 101 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 53.659 5.45e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5518g00070 HLH 7.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5518g00070 - - gmx:100814388 422.165