Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5518g00055 ATGGTGGTGAGGAAAGTGGGGAAGTATGAGATTGGGAGGACGATTGGGGAGGGCACCTTTGCCAAAGTAAAGTTTGCGCAGAACACAGAGACCGGGGAGAGTGTCGCCATGAAAGTGCTCGATCGCAGCACCATCATCAAGCACAAAATGGTGGACCAGGTTCTAGCAAGCCGCACTAAGATCTATATCATATTGGAGTTCATTACAGGTGGCGAATTATTTGATAAAATAGTACACCATAGGCGTATTAGTGAAGCTGAATCAAGAAGATTCTTCCAACAGCTTATTGATGGTGTAGACTTCTGCCACAGCAAGGGAGTTTACCATAGAGATTTAAAGCCCGAAAATCTCTTACTTGATTCCCAAGGAAATATAAAGATTTCAGATTTTGGTTTGAGTGCATTACCAGAACAGGGGGTTAGTATCCTTCGGACAACTTGTGGGACACCAAACTACGTAGCTCCTGAGGTAAATATAAGGGTACTGAGTCACAAGGGTTACAATGGGGCTATGGCAGACGTTTGGTCCTGTGGGGTTATCCTTTATGTTCTGTTGGCTGGATATCTTCCCTTTGATGAACTTGATCTTACTATGTTATACAGTAAGATTGGTAGAGCAGAGTTTTCATACCCAGCCTGGTTTTCAGTGGGAGCAAAATCTTTAATACATAGAATTTTGGACCCCAATCCTCAGACTCGCATAACTATTGAGCAGATACGAAATGATGAGTGGTTTAAAAAAGGCTACGTTCCTGTAAGTCTACTTGAGCATGAAGAAGTAAATTTGGATGACGTAAATGCAGCTTTTGACGATGCTGAGGATCAGGCGGCTAATCAACAGAGTGAAAACGAAGACACGGGTCCTTTGATGCTCAATGCATTTGACTTGATAATCCTGTCTCAAGGCTTAAACCTGGCATCACTATTCGATCGTCGAGAGGACTCTATGTACTACCAAGCACGCTTTATCACTCAAAAGCCAGCAAAGGTGGTTTTATCGAGTATGGAAGTTGTGGCACAATCAATGGGATTTAAGACTCATATTCGCAACTATAAGATGAGAGTGGAGGGTATTTCAGCAGACAGGACTTCTTATTTTTCGGTGATACTGGAAATTTTTGAAGTTGCTCCCACTTTTCTAATGGTGGACATTCAAAGAACCTCTGGAGATGGGAGTGAATACCTCAAGCAGTTTTACAAGACATTTTGCAGCAATCTTGAGGATATAATATGGAAACCGCCTCTTGAAGCATGCAAATCAAAGATGTCCAAGACTAAAAGCAAGAAACGTTAG 1293 0.4223 MVVRKVGKYEIGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVDQVLASRTKIYIILEFITGGELFDKIVHHRRISEAESRRFFQQLIDGVDFCHSKGVYHRDLKPENLLLDSQGNIKISDFGLSALPEQGVSILRTTCGTPNYVAPEVNIRVLSHKGYNGAMADVWSCGVILYVLLAGYLPFDELDLTMLYSKIGRAEFSYPAWFSVGAKSLIHRILDPNPQTRITIEQIRNDEWFKKGYVPVSLLEHEEVNLDDVNAAFDDAEDQAANQQSENEDTGPLMLNAFDLIILSQGLNLASLFDRREDSMYYQARFITQKPAKVVLSSMEVVAQSMGFKTHIRNYKMRVEGISADRTSYFSVILEIFEVAPTFLMVDIQRTSGDGSEYLKQFYKTFCSNLEDIIWKPPLEACKSKMSKTKSKKR 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5518g00055 430 Gene3D Kinase associated domain 1, KA1 285 412 - -
Pral5518g00055 430 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Pral5518g00055 430 Gene3D Transferase(Phosphotransferase) domain 1 68 253 - -
Pral5518g00055 430 ProSiteProfiles NAF domain profile. 286 310 IPR018451 GO:0007165
Pral5518g00055 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 107 119 IPR008271 GO:0004672|GO:0006468
Pral5518g00055 430 Pfam Protein kinase domain 54 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5518g00055 430 Pfam NAF domain 288 346 IPR004041 GO:0007165
Pral5518g00055 430 Coils Coil 255 282 - -
Pral5518g00055 430 SUPERFAMILY Protein kinase-like (PK-like) 6 267 IPR011009 -
Pral5518g00055 430 SMART serkin_6 9 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5518g00055 430 CDD CIPK_C 292 408 - -
Pral5518g00055 430 FunFam Non-specific serine/threonine protein kinase 52 286 - -
Pral5518g00055 430 FunFam Non-specific serine/threonine protein kinase 286 411 - -
Pral5518g00055 430 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 396 - -
Pral5518g00055 430 ProSiteProfiles Protein kinase domain profile. 9 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5518g00055 430 Gene3D Phosphorylase Kinase; domain 1 2 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5518g00055 Pral-Chr5518 341606 346289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5518g00055 1 371 CBL-interacting serine-threonine protein kinases AT4G24400 75.765 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Pral5518g00055 Pkinase 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5518g00055 - - tcc:18591854 711.835