Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5518g00052 ATGGGGAGAGGGAAGATCGTGATTAGGAGAATCGACAATTCGACGAGCAGGCAGGTAACGTTCTCCAAGCGAAGAAACGGTTTACTGAAGAAGGCGAAGGAGCTCGCAATCCTGTGTGACGCTGAGGTAGGAGTTATGATCTTCTCGAGCACCGGCAGGCTCTACGACTTCGCCAGCACAAGCATGAAATCAGTAATCGAACGATACGGCAAAACTAAAGAGGAAAATCATCAACTAGGAAGTTCAACTTCTGAAGTGAAGTTTTGGCAAAGGGAGGCAGCAATGTTGAGGCAGCAATTGCAGAACTTGCAAGAGAATCATCGGCAAATAATGGGAGAAGAACTTTCAGGTTTGACTGTCAAGGAATTACAGAGTCTAGAGAGCCAGTTGGAAATTAGCCTTCGAGGTGTCCGTTTAAAAAAGGATCAACTTTTAATGGAGGAAATACAGGAAATAAACCAAAAGGGAAACCTCTTACAGGAAGAAAATGTGGAACTTCGAAAGAAGGTAAACCTAGTTCATCAAGAAAACAAGGAATTAAAAAAGAAGGTCTATGGAAAAATAGATGGAAATGGAACAGACAGAAACTCAGCTCTCACGGATGGCCTAGGCATAGGAGAGAATTTGCACGTGCCAGTAAATCTCCAGCTTAGTCAACCTCATCAGCAAAACCATGAGCCACCCTCGGGAGGCACAGAGTTGGGCAGATTGCAGCTGCACTGA 723 0.4467 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGRLYDFASTSMKSVIERYGKTKEENHQLGSSTSEVKFWQREAAMLRQQLQNLQENHRQIMGEELSGLTVKELQSLESQLEISLRGVRLKKDQLLMEEIQEINQKGNLLQEENVELRKKVNLVHQENKELKKKVYGKIDGNGTDRNSALTDGLGIGENLHVPVNLQLSQPHQQNHEPPSGGTELGRLQLH 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5518g00052 240 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Pral5518g00052 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral5518g00052 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral5518g00052 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral5518g00052 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral5518g00052 240 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pral5518g00052 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral5518g00052 240 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Pral5518g00052 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral5518g00052 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 210 - -
Pral5518g00052 240 Coils Coil 86 113 - -
Pral5518g00052 240 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5518g00052 240 Coils Coil 149 183 - -
Pral5518g00052 240 MobiDBLite consensus disorder prediction 219 240 - -
Pral5518g00052 240 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5518g00052 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral5518g00052 240 FunFam MADS-box transcription factor MADS-MC 13 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5518g00052 Pral-Chr5518 310647 320414 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5518g00052 1 231 MADS-box Gene Family AT2G22630 58.874 3.45e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral5518g00052 K-box 2.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5518g00052 K09264 - qsa:O6P43_015429 380.178