Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5518g00051 ATGGGGAGAGGGAAGATCGTGATTAGGAGAATCGACAATTCGACGAGCAGGCAGGTAACGTTCTCCAAGCGAAGAAACGGTTTACTGAAGAAGGCGAAGGAGCTCGCAATCCTGTGTGACGCTGAGGTAGGAGTTATGATCTTCTCGAGCACCGGCAGGCTCTACGACTTCGCCAGCACAAGCATGAAATCAGTAATCGAACGATACGGCAAAACTAAAGAGGAAAATCATCAACTAGGAAGTTCAACTTCTGAAGTGAAGTTTTGGCAAAGGGAGGCAGCAATGTTGAGGCAGCAATTGCAGAACTTGCAAGAGAATCATCGGCAAATAATGGGAGAAGAACTTTCAGGTTTGACTGTCAAGGAATTACAGAGTCTAGAGAGCCAGTTGGAAATTAGCCTTCGAGGTGTCCGTTTAAAAAAGGATCAACTTTTAATGGAGGAAATACAGGAAATAAACCAAAAGGGAAACCTCTTACAGGAAGAAAATGTGGAACTTCGAAAGAAGGTCTATGGAAAAATAGATGGAAATGGAACAGACAGAAACTCAGCTCTCACGGATGGCCTAGGCATAGGAGAGAATTTGCACGTGCCAGTAAATCTCCAGCTTAGTCAACCTCATCAGCAAAACCATGAGCCACCCTCGGGAGGCACAGAGTTGGGCAGATTGCAGCTGCACTGA 681 0.4567 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGRLYDFASTSMKSVIERYGKTKEENHQLGSSTSEVKFWQREAAMLRQQLQNLQENHRQIMGEELSGLTVKELQSLESQLEISLRGVRLKKDQLLMEEIQEINQKGNLLQEENVELRKKVYGKIDGNGTDRNSALTDGLGIGENLHVPVNLQLSQPHQQNHEPPSGGTELGRLQLH 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5518g00051 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral5518g00051 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral5518g00051 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral5518g00051 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral5518g00051 226 Coils Coil 149 169 - -
Pral5518g00051 226 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Pral5518g00051 226 ProSiteProfiles K-box domain profile. 86 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5518g00051 226 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Pral5518g00051 226 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pral5518g00051 226 MobiDBLite consensus disorder prediction 205 226 - -
Pral5518g00051 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral5518g00051 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 208 - -
Pral5518g00051 226 Coils Coil 86 113 - -
Pral5518g00051 226 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Pral5518g00051 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral5518g00051 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral5518g00051 226 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5518g00051 Pral-Chr5518 310391 320414 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5518g00051 1 219 MADS-box Gene Family AT4G37940 60.274 2.13e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral5518g00051 K-box 2.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5518g00051 K09264 - qsa:O6P43_015429 352.058