Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5518g00018 ATGCAGCTGTCTCACGACATTAGGGCCTACGACAATGGTGGATGCTGCAGTTTTCATCATAAACCAATGGGCGTTGGTCGATTACATTTGGTTAATATCAATCTTTTGCCGCATGGTTTGAGGCGTGATTCTTCAGCTCTCCATCTTTTAAGTAAAGTACATGCCCCACTAAGGCCTGTTCCTTCCAGATGTAATGTTTTATTGTGCCGTTCCATATTAATACCAGGCGGAGGCAGTTGGACCCCGTTAACAAAATCTGCTTCTGTTATCCTGAAAAGATCATATGATGCTTTGCAAGGAAGCGCTGTCACTACTCAATTGATCCCGGCCCTTGGTGTCATTGCCTTTGCTGTTTGTGGTCTTGAACCTCTCATGCGTCTGTGCAGGATTATATTTTTTCAAAGGAATGATAATAGTTGGAAGAAAAGTAGTTCGCGTCATATTATGACATCTTATCTTCAGCCTTTGCTGCTGTGGACTGGGGTTATTCTCACCTGCAGGGCATTAGATCCACTGAACCTACCATCAGAAGCCAGCCAGGCAGTGAAGCAACGGCTGCTGAATTTTGCGAGATCTTTGTCAACTGTGCTCTCATTTGCTTATTGTTTATCAAGCTTAATTCAACAAGCACAAATATTCTTTACGGAGGCAAACGAATCCAATGATGCAAGAAATGTGGGCTTTGATTTTGCTGGGAAAGCTGTGTATACTGCTGTATGGGTTGCTGCTGTATCATTGTTCATGGAGCTGCTAGGTTTCTCCACACAGAAGTGGGTAACTGCTGGTGGTTTGGGTACAGTATTGCTAACACTAGCTGGCCGTGAGATATTTACAAACTTCCTTTCAAGTGTAATGATTCATGCAACCCGGCCATTTGTTGTAAATGAGTGGATTAAAACGAAGATTGATGGATACGAGGTTTCTGGTGTAGTTGAGCACGTCGGTTGGTGGTCCCCAACTATAGTTAGAGGTGATGATCGTGAAGCAGTTCATATTCCTAATCACAAATTCACTGTCAACGTGGTGCGGAATCTTACTCAGAGAACTCATTGGCGCATCAAGACTCACCTTGCTATTAGTCACTTGGATGTTAACAAAATTAATATACTAGTATCTTGCTTTGTTAAAACTTCACATTTTGAAGAATACCTGTGTGTCCAGGAGGCAATCCTTTTGGATCTTCTGAGAGTTATTAGTCATCATCGAGCCCGGCTAGCCACACCCATCCGCACAGTCCAGAAAATATACAGTGAGGCTGACTTGGAAAACATACCATTTGGTGATACCATTTTTACTCGCTCCAGAGCAGCTGCAAATCGCCCATTTCTACTGATAGAGCCACCTTCCAAAGTTAATGGTGAAGATAGGACCAAGGCTCCTACTCGTTCAACACGCCCGAGCGAAGAAAAAGATGCTAAAATTGATGAAATTTTGACATCTGATTTCAAAGATGACAATATTGCAGCGACATCAACATCAACATCCAGCGCAAACTCCAGGGATAAATCAAAATCAATCTCTGAAGCACAAGCTCAGAATATGGGTTCTGATAGTACTGTCAAGACATCCAAAACCACGCAGCCCAGAAAGGAAAGTGCAGGAGATGCAGGAAAGGCGCCAGCTGCCCCAGTAAATAAAGAACTTGCTCAAAGTGTTGCTCCTGAAAATTCTTCTGCTTCTTCTTCACATGGGTTTGCTGGAAGGGGAGATACTACTCCTGCTGCACCTTTACAGGCAAAGCAGGAAGAAGACAAATATGCTGCATCCCCAGCCAGGCCTTCATTGGAAGAAAATATTGTTCTTGGCGTTGCCCTAGAGGGTTCAAAACGAACCCTTCCAATTGACGAAGAAATGACTCCACCTCCTATCCCCACTGAGGCACAAGATTTTGCTGCCCCAAGAAATGGACATGGAAATGGATCCGCTGCTGGCAAGGATAAAAAGGATGGTCAAGTTTCCACCAAGCAGCAGAGCGATTAG 1980 0.4394 MQLSHDIRAYDNGGCCSFHHKPMGVGRLHLVNINLLPHGLRRDSSALHLLSKVHAPLRPVPSRCNVLLCRSILIPGGGSWTPLTKSASVILKRSYDALQGSAVTTQLIPALGVIAFAVCGLEPLMRLCRIIFFQRNDNSWKKSSSRHIMTSYLQPLLLWTGVILTCRALDPLNLPSEASQAVKQRLLNFARSLSTVLSFAYCLSSLIQQAQIFFTEANESNDARNVGFDFAGKAVYTAVWVAAVSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIKTKIDGYEVSGVVEHVGWWSPTIVRGDDREAVHIPNHKFTVNVVRNLTQRTHWRIKTHLAISHLDVNKINILVSCFVKTSHFEEYLCVQEAILLDLLRVISHHRARLATPIRTVQKIYSEADLENIPFGDTIFTRSRAAANRPFLLIEPPSKVNGEDRTKAPTRSTRPSEEKDAKIDEILTSDFKDDNIAATSTSTSSANSRDKSKSISEAQAQNMGSDSTVKTSKTTQPRKESAGDAGKAPAAPVNKELAQSVAPENSSASSSHGFAGRGDTTPAAPLQAKQEEDKYAASPARPSLEENIVLGVALEGSKRTLPIDEEMTPPPIPTEAQDFAAPRNGHGNGSAAGKDKKDGQVSTKQQSD 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5518g00018 659 MobiDBLite consensus disorder prediction 484 530 - -
Pral5518g00018 659 MobiDBLite consensus disorder prediction 451 482 - -
Pral5518g00018 659 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 368 IPR045042 -
Pral5518g00018 659 Gene3D - 181 290 - -
Pral5518g00018 659 MobiDBLite consensus disorder prediction 550 567 - -
Pral5518g00018 659 Pfam Mechanosensitive ion channel 233 358 IPR006685 GO:0016020|GO:0055085
Pral5518g00018 659 SUPERFAMILY Sm-like ribonucleoproteins 276 346 IPR010920 -
Pral5518g00018 659 Gene3D - 291 344 IPR023408 -
Pral5518g00018 659 MobiDBLite consensus disorder prediction 445 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5518g00018 Pral-Chr5518 98411 104680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5518g00018 1 617 Mechanosensitive Ion Channel Family AT1G58200 50.963 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5518g00018 K22047 - gmx:100796022 910.212