Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5518g00017 ATGGCGAGGGAGAAGATCAAGATCAAGAAAATCGACAACGTGACGGCGAGGCAGGTGACTTTCTCCAAAAGAAGACGAGGGCTCTTCAAGAAAGCCTCGGAGCTTTCAGTTCTATGTGATGCTGAGGTTGGTCTCATTGTCTTCTCTTCCACCGGCAAGCTCTTTGAATACTCCAGCTCCAGCATGAAGGACATAATTACAAGGTATAATATGTACTCTCGTGACATCAACAAACATGACAAACCATCTCTAGAACTGCAGATAGAGAACGGCGATAACTACAAATTGGGCAAAGAAGTCGCCGAGAAAACACAGCAGCTAAGGCGCATGAAAGGCGAAGATCTTCAAGGACTAAACGTAGAAGATTTGCTGCAACTGGAAAAATTACTTGAAGCAGGACTTGGCCGCGTAATTGAAACGAAGGAAAATCGGATTATGAGTGAGATCGCTGCACTTCAGAAAAAGGGGATAGAGTTGGTGGAAGAGAACAAGCAGCTGAAGCAGCAGATGGAGATGTTGTGTAGAGGAATAATGCAAGTTCAGGCGGTGGAGTCATCAGATATTGGGATTCAAGAAGAAGGCGTCTCGTCGGATTCCATGACGAACGTTTACAGCTGCAACAGTGGCCCTCCTCTTGATGATGATTCCTCGGACACTTCCCTCAAGTTAGGGTTGCCTTACTCCAACTGCAAATAG 696 0.4598 MAREKIKIKKIDNVTARQVTFSKRRRGLFKKASELSVLCDAEVGLIVFSSTGKLFEYSSSSMKDIITRYNMYSRDINKHDKPSLELQIENGDNYKLGKEVAEKTQQLRRMKGEDLQGLNVEDLLQLEKLLEAGLGRVIETKENRIMSEIAALQKKGIELVEENKQLKQQMEMLCRGIMQVQAVESSDIGIQEEGVSSDSMTNVYSCNSGPPLDDDSSDTSLKLGLPYSNCK 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5518g00017 231 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5518g00017 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral5518g00017 231 Coils Coil 149 169 - -
Pral5518g00017 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral5518g00017 231 FunFam Transcription factor, MADS-box 13 83 - -
Pral5518g00017 231 Pfam K-box region 94 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5518g00017 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Pral5518g00017 231 MobiDBLite consensus disorder prediction 201 220 - -
Pral5518g00017 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral5518g00017 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral5518g00017 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral5518g00017 231 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Pral5518g00017 231 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Pral5518g00017 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral5518g00017 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral5518g00017 231 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5518g00017 Pral-Chr5518 88884 95768 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5518g00017 1 227 MADS-box Gene Family AT2G22540 58.577 4.03e-96 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral5518g00017 K-box 1.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5518g00017 - - tcc:18591803 309.686