Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5518g00014 ATGGGTGGTGCGCCTTCTTTCAAGCCATTCACCAGATTTTTCTTATTCTTCTTCGTCCTCCCCACCACAATCATACTCCTTGCACCGACTGCTGCTGGTGAAACCCCATCTTCTCCTTTAGGCTGGACCGATTATGAAAACGCCACGGGAAAAAATCCGCCTCCGCCTCCGCCGCCATCGGGAAGTCAACGTGGCGGAGGAGGAAGAGGGTCTCCGTTTAAGCCGAGCGTGGTCGTTCTAGTTGGGGTGATGACAACCCTGTTTTTTCTTACCTTCCTCCTCCTCCTCTATGTTAAGCACTGTAAACCAGAGGAGGAGCCGCTAAGGAATTCGCATACAAGCGCTGGTTATTCAGGGAGGAAGAACTCCGGCATTGACAGGGTGGTGATCGAGTCGTTACCCATTTTCAGATTCGGATCGTTAAGGGGCCAAAAAGAGGGGCTTGAATGCGCCGTTTGCCTGACCCCGTTTGAGTCCGTGGAGGTTCTTCGGTTGCTTCCAAAATGCAAGCACGCCTTCCATGTCGAGTGCGTGGATACGTGGCTGGACGCGCATTCCACTTGCCCGCTTTGCCGGTACCGGGTCGACCCAGAAGACATCCTCCTGGTTGGGGACGCCAAAATTTGGCCGCAGAATCAACCCATTCCACCGATACAAGAGATTTCTGAAAATCCGCAGCATTGTACAGACATAGAGAGCGGCCTTGGACCGGATTCACAGAATCTGTTCGATTCAAACTCGATTCTAAGGCGCGTCTCCGGGAGGCACTCATCCGTAGGCGAGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCTGGTGGTGGTGGGCTCTTAAAGATTATATTCCAGCATCGAATCAGCGTGGACGGCGAAAACGACGCCGACGCCAAGGCAGAAGAAAACGGCGCCGCTTAGGATGTCACTGGACAGTGCAATGTCGACGAAGAGGAAAAGAAACGAGACCGGTAAAGCAAGGGAAGGCAGTGAGTGCGATGGCGCAAGAAAAGATGGGTTACTGCTTACGGAGAAGGAGAAGAAGCACAGGGTGGAACACAGGATCATAG 1068 0.5356 MGGAPSFKPFTRFFLFFFVLPTTIILLAPTAAGETPSSPLGWTDYENATGKNPPPPPPPSGSQRGGGGRGSPFKPSVVVLVGVMTTLFFLTFLLLLYVKHCKPEEEPLRNSHTSAGYSGRKNSGIDRVVIESLPIFRFGSLRGQKEGLECAVCLTPFESVEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVGDAKIWPQNQPIPPIQEISENPQHCTDIESGLGPDSQNLFDSNSILRRVSGRHSSVGERGGGGGGGGGGGWWWWALKDYIPASNQRGRRKRRRRQGRRKRRRLGCHWTVQCRRRGKETRPVKQGKAVSAMAQEKMGYCLRRRRRSTGWNTGS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5518g00014 355 Pfam Ring finger domain 149 192 IPR001841 -
Pral5518g00014 355 FunFam RING-H2 finger protein ATL43 125 199 - -
Pral5518g00014 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 199 IPR013083 -
Pral5518g00014 355 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Pral5518g00014 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 54 223 - -
Pral5518g00014 355 CDD RING-H2_EL5-like 149 192 - -
Pral5518g00014 355 SMART ring_2 150 191 IPR001841 -
Pral5518g00014 355 MobiDBLite consensus disorder prediction 34 70 - -
Pral5518g00014 355 SUPERFAMILY RING/U-box 128 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5518g00014 Pral-Chr5518 75958 77025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5518g00014 71 264 C3H Transcription Factor Family AT5G05810 53.810 3.87e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5518g00014 K19041 - thj:104826858 199.134