Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5517g00163 ATGGCGACGTACTTCCATGGTAATTCAGAAATCCAAGCACCCGACGGCGGTCTTCAAACTCTTGTACTCATGAACCCAGGCTACATCCAGTACTCCGACACACCTCCGCCGCAACCATCGCATCCCGGAAACCTTGTCTTCCTCAATTCTGCCAACAACTCGCTCCCTTCCCAAACCCTACAACACGCGCCGCCCTCTCACACCCAACAATTCGTCGGCATCCCTCTCCCCGCTTCCTCCCACGACCCCACGCACCACTCCATGCATCCCCATCACGATGTCTCTGCTCTGCATGGATTCGTGCCCCGCATGCAGTACAACCTCTGGAGTACAGTCAACTCCAACGCGGCGGCGAGTGATACCCCACGCTCTCAACGGGGTCTGTCCCTCAGCCTTTCCTCTCAGCAGGCAGGGATGGGGTCTTTCCGGGTCGATCGTGACGTATCACAGGGTCAGGCGCCAACTATGTCAGGGGATGATGTGCGTGCGTCAGGTGGGTCACCGTCTTCGGCTTCCGGAGTTACTAATGGCGTTTCAGGGATTCAGAGCGTGCTTCAGGGCTCTAAGTACTTGAAGGCAGCTCAGGAACTGCTAGACGAGGTCGTGAACGTCAACGATGGGATAAAGAGCGAAATGGCTAAGAAAAGTCGCAGCCAGACAAAGGCGAATAAAGATTCTTCCACGGCGGCGAGTGGAGATGGTTCAGCTGGCGGAGAGGGAAGCGCCAAGCCCAGCTCTGAGCTCACCACTGCGGACAAACAAGATATTCAGATGAAGAAGGCGAAGTTGATCAGCATGCTTGACGAGGTGGAGCAGAGGTACAGACAGTATCACCATCAGATGCAGATGGTTAGTTCTTCATTTGAACAAGCTGCAGGGATTGGTTCGGCAAGAACATACACAGCACTAGCACTACAAACGATCTCGAAGCAGTTTCGGTGTTTGAAAGATGCAATAATGGGCCAAATTCGAGCTGCCAACAAGAGCTTAGGAGAGGAAGATTGCTTCGGTACAAAAATGGAAGGCTCGAGGCTTAAATACGTGGACCATCATCTACGCCAACAGCGAGCCCTCCAACAGTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTCGAGCACTTCCTCCACCCTTACCCCAAGGATTCAGACAAACAAATGCTTGCAAAACAAACAGGGCTCACCAGGGGCCAGGTCTCGAATTGGTTCATAAATGCGCGAGTCCGATTGTGGAAGCCGATGGTGGAAGAGATGTACTTGGAGGAGATGAAGGAGCAGGAACAGAACGGTGGGGAGGAGAAATCAAGCAAGAGTAGTGAAGATCCTGGCATTAAATCTTCAGCAGCCCCACAAGAGAAATCTCCTGCCTCTGCCACTGAACCCAGAAGCTTCAATTTCAAACAAGACGTTTCCACAAACCCCAACACTCCAACAGTATCAGTGTCTACGCCATCGACATCACCAGTTGGAGCAAATGCCAGAAACCACCCAGCGTTCAGCTTCATGGGGACTTCAGAGCTAGATGGGATCGCACAACCGAGTCCCAAGAAACCAAGGAACCATGAGATTCTGCAGTCCCCAATTAACGTTGATATGAAGCCCGATGATGCAGGGAATGGCCAAATCTCCATGAAATTTGGGGATGAGAGGCAGAGCAGAGATGGGTACTCTTTCATGGGAAATCAGACGAACTTCATTGGAGGATTTGGGCAGTACCCAATTACAGAAATTGATAGGTTTGAGGCAGAGCAATTCACAACAAGGTTCTCAGGTAATAATGGGGTTTCCCTCACCCTTGGTCTTCCCCACTGTGACTCATTATCGGCAGCGACGCATCAAACATTTCTTCCAAACCAGAGCATTCAACTTGGAAGAAGGATGGAGCTGGGTGAACCAAACGAGTTTGGCGGCATAAACACTTCAACTCCTCTCTCTTCGGCTGCATTTGAGAATATCAATATGCAGAACCCCAAGAAGTTTGCTGCCCAATTGTTGCCAGACTTCGTGGCTTGA 2061 0.5124 MATYFHGNSEIQAPDGGLQTLVLMNPGYIQYSDTPPPQPSHPGNLVFLNSANNSLPSQTLQHAPPSHTQQFVGIPLPASSHDPTHHSMHPHHDVSALHGFVPRMQYNLWSTVNSNAAASDTPRSQRGLSLSLSSQQAGMGSFRVDRDVSQGQAPTMSGDDVRASGGSPSSASGVTNGVSGIQSVLQGSKYLKAAQELLDEVVNVNDGIKSEMAKKSRSQTKANKDSSTAASGDGSAGGEGSAKPSSELTTADKQDIQMKKAKLISMLDEVEQRYRQYHHQMQMVSSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIMGQIRAANKSLGEEDCFGTKMEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRGQVSNWFINARVRLWKPMVEEMYLEEMKEQEQNGGEEKSSKSSEDPGIKSSAAPQEKSPASATEPRSFNFKQDVSTNPNTPTVSVSTPSTSPVGANARNHPAFSFMGTSELDGIAQPSPKKPRNHEILQSPINVDMKPDDAGNGQISMKFGDERQSRDGYSFMGNQTNFIGGFGQYPITEIDRFEAEQFTTRFSGNNGVSLTLGLPHCDSLSAATHQTFLPNQSIQLGRRMELGEPNEFGGINTSTPLSSAAFENINMQNPKKFAAQLLPDFVA 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5517g00163 686 MobiDBLite consensus disorder prediction 117 140 - -
Pral5517g00163 686 FunFam BEL1-like homeodomain protein 9 372 434 - -
Pral5517g00163 686 MobiDBLite consensus disorder prediction 117 175 - -
Pral5517g00163 686 Pfam Associated with HOX 184 320 IPR006563 -
Pral5517g00163 686 MobiDBLite consensus disorder prediction 439 508 - -
Pral5517g00163 686 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 81 455 - -
Pral5517g00163 686 Pfam Homeobox KN domain 386 425 IPR008422 GO:0003677|GO:0006355
Pral5517g00163 686 MobiDBLite consensus disorder prediction 212 253 - -
Pral5517g00163 686 MobiDBLite consensus disorder prediction 457 508 - -
Pral5517g00163 686 Coils Coil 253 273 - -
Pral5517g00163 686 CDD homeodomain 369 430 IPR001356 GO:0003677
Pral5517g00163 686 SMART prehox3 179 321 IPR006563 -
Pral5517g00163 686 MobiDBLite consensus disorder prediction 148 175 - -
Pral5517g00163 686 ProSiteProfiles 'Homeobox' domain profile. 366 429 IPR001356 GO:0003677
Pral5517g00163 686 MobiDBLite consensus disorder prediction 439 456 - -
Pral5517g00163 686 Gene3D - 365 443 - -
Pral5517g00163 686 SMART HOX_1 369 433 IPR001356 GO:0003677
Pral5517g00163 686 SUPERFAMILY Homeodomain-like 370 435 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5517g00163 Pral-Chr5517 754645 758541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5517g00163 1 686 Homeobox Transcription Factor Family AT2G35940 49.800 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pral5517g00163 POX 1.3e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5517g00163 - - qsa:O6P43_006028 969.148