Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5517g00160 ATGGAGAGAGGTTGGAAGCATAATTCGGAGATATCACCGAACTGTCCCAGGTGTGGGTCTTGCAACACCAAGTTCTGCTATTACAATAACTACAGCTTAACTCAACCTCGCTACTTTTGTAAAGGCTGCAGAAGGTACTGGACCAAAGGAGGATCCCTCCGCAACGTCCCCGTTGGTGGCGGCTGCCGGAAAACCAGGCGCCATACTAGCAGGACTTTAAGAGTGAACTCATCAGCCTTGCCTTCACCAAATGCTGCTGCTGTTTCATCTTCTAGCTCCTCATCACCGGCCTCTGATCATGCTCCACATATTGATATTGCACTCATTTATGCCAATTTTCTCAATCAAAACCCAGATCAAGTGACCAGGAGCCGCATCATCAAATCCCATTTCAACATTGCTGCGGGTCATCGTCTAGGTGGGCTATGCAACTCCATGCAGGAGCATAAGGGAGAGAGAATAATTGGCAGTAGCGATTTTGAGCTGCCACCATTGCCAGGTGAAGAGGTCGCCTCGCAGTATGACATGATGATGTGGTCCGAATCTCATGATGAGATGATGGTCGTAAACCAGGCGCCACTTGGAACTCATCAACCTCATGTAGATGGTAACTGGGGACATTTTCATTACTCAACCAATGTTTCTTTTCCCGGCCTTTGA 660 0.4818 MERGWKHNSEISPNCPRCGSCNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKTRRHTSRTLRVNSSALPSPNAAAVSSSSSSSPASDHAPHIDIALIYANFLNQNPDQVTRSRIIKSHFNIAAGHRLGGLCNSMQEHKGERIIGSSDFELPPLPGEEVASQYDMMMWSESHDEMMVVNQAPLGTHQPHVDGNWGHFHYSTNVSFPGL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5517g00160 219 ProSiteProfiles Zinc finger Dof-type profile. 13 67 IPR003851 GO:0003677|GO:0006355
Pral5517g00160 219 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 147 IPR045174 GO:0003700|GO:0006355
Pral5517g00160 219 MobiDBLite consensus disorder prediction 78 98 - -
Pral5517g00160 219 Pfam Dof domain, zinc finger 14 67 IPR003851 GO:0003677|GO:0006355
Pral5517g00160 219 ProSitePatterns Zinc finger Dof-type signature. 15 51 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5517g00160 Pral-Chr5517 730550 731297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5517g00160 8 201 C2C2-Dof Transcription Factor Family AT3G52440 44.907 1.44e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral5517g00160 zf-Dof 2.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5517g00160 - - vvo:131625031 194.512