Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral5517g00152 | ATGGCTGCTACAACCGCTCCTTCCTCTTCCATCTGCAACCGACTCCACAGCCTCTACGTCACTCCCTCTTCCTTCTCAATCACCCTCAAATTCCCTCCCACGCCCATTTCTCAAAAGCCCCCCAACCTCAGTCTCAAATCCCACTTCCTCAATTCCTCTCCTCTCTCACTCTTCCATCTTCGTTTGGCTTCGGCTGCCTTTGATGGATTCGAAGTCGCTCAAGACAGCACAAACGCTGAGCAGGTAGAACCAGAAGCCGAACCCTCTGAAAAGTCAGAACAAGAGGAGGATGACCAAAAGGTACCCGACTCAAACGAAGCTGGGAGGCTCTATGTGGGAAATTTGCCCTTTTCGATGACTTCTTCCCAGTTATCTGAAATTTTTCAAGAGGTTGGCAATGTGGTGTCTGTAGAGATAGTATATGATCGCGTCACGGATAGAAGCAGAGGATTTGCATTTGTCACAATGGGAAGCGCTGAGGATGCTAAAGAAGCCATTCGCATGTTTGATGGCTCCCAAGTTGGAGGTAGGACGGTGAAGGTAAACTTTCCAGAAGTGCCAAGAGGAGGAGAAAGGCTAGTGATGGGGCCAAAAGTAAGGAACAACTACAGAGGCTTCGTGGACAGTCCTCACAAGATATACGCTGGAAACCTTGGATGGGGATTGACTTCACAGGGTCTCAGAGATGCTTTTGCTGGCCAACCTGGCTTTTTGAGTGCCAAGGTCATTTATGAAAGGGACACTGGAAGATCTCGAGGCTTTGGGTTTGTCTCCTTCGAAACTGCTGAGGATGTTGAGGCTGCTTTGAATGCTATGAATGGGGTGGAGGTCCAAGGCAGGGCTCTGAGACTGAATCTGGCTGCAGATAGGACAAGTGCATCCCCTCCAACAATGGATGAAACTGCGCAAGAGGAATTGGTGTCTAGCGTTAGCACGTGA | 939 | 0.4952 | MAATTAPSSSICNRLHSLYVTPSSFSITLKFPPTPISQKPPNLSLKSHFLNSSPLSLFHLRLASAAFDGFEVAQDSTNAEQVEPEAEPSEKSEQEEDDQKVPDSNEAGRLYVGNLPFSMTSSQLSEIFQEVGNVVSVEIVYDRVTDRSRGFAFVTMGSAEDAKEAIRMFDGSQVGGRTVKVNFPEVPRGGERLVMGPKVRNNYRGFVDSPHKIYAGNLGWGLTSQGLRDAFAGQPGFLSAKVIYERDTGRSRGFGFVSFETAEDVEAALNAMNGVEVQGRALRLNLAADRTSASPPTMDETAQEELVSSVST | 312 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral5517g00152 | 312 | SUPERFAMILY | RNA-binding domain, RBD | 105 | 185 | IPR035979 | GO:0003676 | |
Pral5517g00152 | 312 | SUPERFAMILY | RNA-binding domain, RBD | 208 | 292 | IPR035979 | GO:0003676 | |
Pral5517g00152 | 312 | PANTHER | OS02G0815200 PROTEIN | 35 | 290 | - | - | |
Pral5517g00152 | 312 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 211 | 289 | IPR000504 | GO:0003723 | |
Pral5517g00152 | 312 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 108 | 186 | IPR000504 | GO:0003723 | |
Pral5517g00152 | 312 | CDD | RRM2_NsCP33_like | 212 | 287 | - | - | |
Pral5517g00152 | 312 | MobiDBLite | consensus disorder prediction | 84 | 104 | - | - | |
Pral5517g00152 | 312 | MobiDBLite | consensus disorder prediction | 290 | 312 | - | - | |
Pral5517g00152 | 312 | SMART | rrm1_1 | 109 | 182 | IPR000504 | GO:0003723 | |
Pral5517g00152 | 312 | SMART | rrm1_1 | 212 | 285 | IPR000504 | GO:0003723 | |
Pral5517g00152 | 312 | FunFam | 33 kDa ribonucleoprotein, chloroplastic | 193 | 297 | - | - | |
Pral5517g00152 | 312 | SMART | rrm2_1 | 109 | 182 | IPR003954 | GO:0003676 | |
Pral5517g00152 | 312 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 213 | 283 | IPR000504 | GO:0003723 | |
Pral5517g00152 | 312 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 110 | 180 | IPR000504 | GO:0003723 | |
Pral5517g00152 | 312 | Gene3D | - | 67 | 191 | IPR012677 | - | |
Pral5517g00152 | 312 | MobiDBLite | consensus disorder prediction | 74 | 106 | - | - | |
Pral5517g00152 | 312 | CDD | RRM1_PSRP2_like | 109 | 188 | - | - | |
Pral5517g00152 | 312 | Gene3D | - | 197 | 297 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral5517g00152 | Pral-Chr5517 | 689684 | 691463 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral5517g00152 | 110 | 287 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 31.868 | 4.28e-19 | 85.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral5517g00152 | - | - | qsa:O6P43_009680 | 416.001 |