Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5517g00152 ATGGCTGCTACAACCGCTCCTTCCTCTTCCATCTGCAACCGACTCCACAGCCTCTACGTCACTCCCTCTTCCTTCTCAATCACCCTCAAATTCCCTCCCACGCCCATTTCTCAAAAGCCCCCCAACCTCAGTCTCAAATCCCACTTCCTCAATTCCTCTCCTCTCTCACTCTTCCATCTTCGTTTGGCTTCGGCTGCCTTTGATGGATTCGAAGTCGCTCAAGACAGCACAAACGCTGAGCAGGTAGAACCAGAAGCCGAACCCTCTGAAAAGTCAGAACAAGAGGAGGATGACCAAAAGGTACCCGACTCAAACGAAGCTGGGAGGCTCTATGTGGGAAATTTGCCCTTTTCGATGACTTCTTCCCAGTTATCTGAAATTTTTCAAGAGGTTGGCAATGTGGTGTCTGTAGAGATAGTATATGATCGCGTCACGGATAGAAGCAGAGGATTTGCATTTGTCACAATGGGAAGCGCTGAGGATGCTAAAGAAGCCATTCGCATGTTTGATGGCTCCCAAGTTGGAGGTAGGACGGTGAAGGTAAACTTTCCAGAAGTGCCAAGAGGAGGAGAAAGGCTAGTGATGGGGCCAAAAGTAAGGAACAACTACAGAGGCTTCGTGGACAGTCCTCACAAGATATACGCTGGAAACCTTGGATGGGGATTGACTTCACAGGGTCTCAGAGATGCTTTTGCTGGCCAACCTGGCTTTTTGAGTGCCAAGGTCATTTATGAAAGGGACACTGGAAGATCTCGAGGCTTTGGGTTTGTCTCCTTCGAAACTGCTGAGGATGTTGAGGCTGCTTTGAATGCTATGAATGGGGTGGAGGTCCAAGGCAGGGCTCTGAGACTGAATCTGGCTGCAGATAGGACAAGTGCATCCCCTCCAACAATGGATGAAACTGCGCAAGAGGAATTGGTGTCTAGCGTTAGCACGTGA 939 0.4952 MAATTAPSSSICNRLHSLYVTPSSFSITLKFPPTPISQKPPNLSLKSHFLNSSPLSLFHLRLASAAFDGFEVAQDSTNAEQVEPEAEPSEKSEQEEDDQKVPDSNEAGRLYVGNLPFSMTSSQLSEIFQEVGNVVSVEIVYDRVTDRSRGFAFVTMGSAEDAKEAIRMFDGSQVGGRTVKVNFPEVPRGGERLVMGPKVRNNYRGFVDSPHKIYAGNLGWGLTSQGLRDAFAGQPGFLSAKVIYERDTGRSRGFGFVSFETAEDVEAALNAMNGVEVQGRALRLNLAADRTSASPPTMDETAQEELVSSVST 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5517g00152 312 SUPERFAMILY RNA-binding domain, RBD 105 185 IPR035979 GO:0003676
Pral5517g00152 312 SUPERFAMILY RNA-binding domain, RBD 208 292 IPR035979 GO:0003676
Pral5517g00152 312 PANTHER OS02G0815200 PROTEIN 35 290 - -
Pral5517g00152 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Pral5517g00152 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Pral5517g00152 312 CDD RRM2_NsCP33_like 212 287 - -
Pral5517g00152 312 MobiDBLite consensus disorder prediction 84 104 - -
Pral5517g00152 312 MobiDBLite consensus disorder prediction 290 312 - -
Pral5517g00152 312 SMART rrm1_1 109 182 IPR000504 GO:0003723
Pral5517g00152 312 SMART rrm1_1 212 285 IPR000504 GO:0003723
Pral5517g00152 312 FunFam 33 kDa ribonucleoprotein, chloroplastic 193 297 - -
Pral5517g00152 312 SMART rrm2_1 109 182 IPR003954 GO:0003676
Pral5517g00152 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 283 IPR000504 GO:0003723
Pral5517g00152 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 180 IPR000504 GO:0003723
Pral5517g00152 312 Gene3D - 67 191 IPR012677 -
Pral5517g00152 312 MobiDBLite consensus disorder prediction 74 106 - -
Pral5517g00152 312 CDD RRM1_PSRP2_like 109 188 - -
Pral5517g00152 312 Gene3D - 197 297 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5517g00152 Pral-Chr5517 689684 691463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5517g00152 110 287 Eukaryotic Initiation Factors Gene Family AT3G16380 31.868 4.28e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5517g00152 - - qsa:O6P43_009680 416.001