Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5517g00135 ATGGAGGTTCCGGACATGGAAGACAAGAACAACGAAAGTCGTATGACGTCAGCTGCAGCCTTTGTGGAAGGGGGCGTTCAAGAAGCATGTGATGATTCTTGCAGCATATGCCTTGAGGATTTTAGTGAAAGCAATCCTTCAGCGGTTACTACTTGCAAGCATGATTTTCACCTGCAGTGCATTCTTGAATGGTGTCAGAGGAGCTCCCAGTGCCCTATGTGTTGGCAGTCTATTAGTTTCAAGGATTCTACAAGTCAAGAATTGTTTGGGGCTGTGGTTCAGGAAAGGAATTTGAGAGCTACTTCCTCAAGAAATGCAACTATTTTCCATCACCTCGCTGGTCTTGGTGATTTTGACTTGCAGCATTTATCCATGGGAGTAAGTGAAGCAGATATTGAAGAGAGGATAATTCAACATTTAGCTGCTGCTACAGTCATGGGAAGAGGCTTCAACCTTGGTTGGAGAGAAGGAAATAGGACTAGATCATTCCCTCACGGTCGTCCTCCCTTCATAGTGTTCTCAACTCCTCCACCCGGTGCTGTGTCTGCTGCTGCAGGGGGAACTGAACCAACTGCAATTCCTATAGGAAATCCGTCTACCCCACTTACATCTGGAGTTGAACCATCACAGCAGATCCCAGCCCTTCAAACAGAGAGTTCTTTACCTCCTGGATATACTGACATGGCGACAAATCGTCAAAGAATTCTTTTTAATGATAGTTCTGCTGTCCGTTCTGTACCACCTGACCAGGGCAGAGCAGGGCCATCAGAACTTCAGTCATTTTCCGAGTCTCTGCGATCCAGACTTGGTTCAGTGTCTATGAGATACAAAGAGACTATTTCAAAGGGCGCAAGGGGATGGAAGGAAAGGCTGTTCTCTCGTAGCACTTCCATGTCTGATATTGGTGCAGAAGTCAGGAGAGAGTTGAATGCTGGAATTGCTAGTGTATCCCGCTTGATGGAGCGCCTTGAAACAAGAGAAAAGAACGATAGACAAGGGGATAGTTCTTTGTCGAATCATGTGGCTGCAGAGACAAGCAACTCAAACAATGCCGAAGCTAGTGAGGTTAACACTCTGTGTGACAAAGCTCCAGCAGCTTGTTCTGCTGGCCCACGCTCAGACTGA 1125 0.4676 MEVPDMEDKNNESRMTSAAAFVEGGVQEACDDSCSICLEDFSESNPSAVTTCKHDFHLQCILEWCQRSSQCPMCWQSISFKDSTSQELFGAVVQERNLRATSSRNATIFHHLAGLGDFDLQHLSMGVSEADIEERIIQHLAAATVMGRGFNLGWREGNRTRSFPHGRPPFIVFSTPPPGAVSAAAGGTEPTAIPIGNPSTPLTSGVEPSQQIPALQTESSLPPGYTDMATNRQRILFNDSSAVRSVPPDQGRAGPSELQSFSESLRSRLGSVSMRYKETISKGARGWKERLFSRSTSMSDIGAEVRRELNAGIASVSRLMERLETREKNDRQGDSSLSNHVAAETSNSNNAEASEVNTLCDKAPAACSAGPRSD 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5517g00135 374 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 17 82 - -
Pral5517g00135 374 Coils Coil 306 326 - -
Pral5517g00135 374 ProSiteProfiles Zinc finger RING-type profile. 34 74 IPR001841 -
Pral5517g00135 374 Pfam Ring finger domain 32 74 IPR001841 -
Pral5517g00135 374 MobiDBLite consensus disorder prediction 335 356 - -
Pral5517g00135 374 SUPERFAMILY RING/U-box 27 82 - -
Pral5517g00135 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 84 IPR013083 -
Pral5517g00135 374 SMART ring_2 34 74 IPR001841 -
Pral5517g00135 374 MobiDBLite consensus disorder prediction 325 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5517g00135 Pral-Chr5517 601808 605993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5517g00135 31 82 C3H Transcription Factor Family AT4G00335 48.077 5.86e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5517g00135 K19043 - qsa:O6P43_005750 457.218